Variant report

Variant	rs57155167
Chromosome Location	chr13:97931291-97931292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97872309..97876314-chr13:97928603..97932246,5	MCF-7	breast:
2	chr13:97910306..97912437-chr13:97930415..97933005,2	MCF-7	breast:
3	chr13:97906088..97907900-chr13:97930922..97932761,2	MCF-7	breast:
4	chr13:97930811..97933716-chr13:97934774..97936909,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OXGR1-5	chr13:97931151-97931346	NONHSAT034830

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3818590	1.00[AFR][1000 genomes]
rs55927664	1.00[AFR][1000 genomes]
rs9554399	1.00[AFR][1000 genomes]
rs9556721	1.00[AFR][1000 genomes]
rs9556725	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97910600-97935000	Weak transcription	Colonic Mucosa	Colon
2	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
3	chr13:97919000-97935000	Weak transcription	Gastric	stomach
4	chr13:97920400-97932200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:97921400-97932800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:97921400-97934800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:97921600-97932800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:97922000-97932200	Weak transcription	Thymus	Thymus
9	chr13:97922000-97933200	Weak transcription	Spleen	Spleen
10	chr13:97924800-97936200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:97925200-97936400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:97925400-97933000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:97925600-97935600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr13:97925800-97932200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:97925800-97936600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr13:97926000-97933000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr13:97926800-97932200	Weak transcription	Esophagus	oesophagus
19	chr13:97926800-97932800	Weak transcription	Pancreas	Pancrea
20	chr13:97926800-97932800	Weak transcription	Right Atrium	heart
21	chr13:97926800-97935000	Weak transcription	Lung	lung
22	chr13:97927800-97931800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:97928600-97933400	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr13:97929000-97937600	Enhancers	Colon Smooth Muscle	Colon
25	chr13:97929000-97947200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr13:97929200-97936400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:97929400-97932800	Weak transcription	Psoas Muscle	Psoas
28	chr13:97929400-97934800	Enhancers	Brain Anterior Caudate	brain
29	chr13:97929400-97935000	Weak transcription	Aorta	Aorta
30	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr13:97929600-97932400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr13:97929600-97932600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr13:97929600-97932800	Weak transcription	Fetal Heart	heart
34	chr13:97929600-97932800	Enhancers	Rectal Smooth Muscle	rectum
35	chr13:97929600-97932800	Weak transcription	Right Ventricle	heart
36	chr13:97929600-97933000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr13:97929600-97933000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr13:97929600-97933200	Weak transcription	K562	blood
39	chr13:97929600-97933600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr13:97929600-97934800	Weak transcription	GM12878-XiMat	blood
41	chr13:97929600-97938800	Weak transcription	Fetal Intestine Small	intestine
42	chr13:97929600-97953400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr13:97929800-97932600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:97929800-97932800	Weak transcription	Fetal Thymus	thymus
45	chr13:97929800-97934000	Genic enhancers	HepG2	liver
46	chr13:97929800-97936000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr13:97929800-97953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr13:97929800-97953400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr13:97930000-97932200	Weak transcription	Hela-S3	cervix
50	chr13:97930000-97933000	Enhancers	HUVEC	blood vessel

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