Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98086485..98088479-chr13:98132140..98136116,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10459305	1.00[CEU][hapmap]
rs2039086	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28667337	1.00[EUR][1000 genomes]
rs3818590	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57155167	1.00[AFR][1000 genomes]
rs9554398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9554399	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9554402	1.00[EUR][1000 genomes]
rs9556703	1.00[CEU][hapmap]
rs9556713	1.00[CEU][hapmap]
rs9556721	1.00[AFR][1000 genomes]
rs9556722	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9556732	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9556734	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9556736	1.00[EUR][1000 genomes]
rs9556737	1.00[EUR][1000 genomes]
rs9556738	1.00[EUR][1000 genomes]
rs9556739	1.00[EUR][1000 genomes]
rs9556741	1.00[EUR][1000 genomes]
rs9582130	1.00[EUR][1000 genomes]
rs9634496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98128200-98136200	Weak transcription	Fetal Lung	lung
2	chr13:98132200-98135600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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