Variant report
| Variant | rs9556734 |
|---|---|
| Chromosome Location | chr13:98184816-98184817 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000125249 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs2039086 | 1.00[EUR][1000 genomes] |
| rs28667337 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3818590 | 1.00[EUR][1000 genomes] |
| rs9554398 | 1.00[EUR][1000 genomes] |
| rs9554399 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9554402 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9556722 | 1.00[EUR][1000 genomes] |
| rs9556725 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9556732 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9556736 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9556737 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9556738 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9556739 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9556741 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9582130 | 1.00[EUR][1000 genomes] |
| rs9634496 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043113 | chr13:98136208-98485012 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv541884 | chr13:98136208-98485012 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
