Variant report

Variant	rs9556736
Chromosome Location	chr13:98201051-98201052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10459305	1.00[CEU][hapmap]
rs2039086	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28667337	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3818590	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9554398	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9554399	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9554402	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9556713	1.00[CEU][hapmap]
rs9556722	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9556725	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9556732	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9556734	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556737	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556738	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556739	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556740	0.81[ASN][1000 genomes]
rs9556741	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9582130	1.00[EUR][1000 genomes]
rs9634496	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98198600-98201200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:98200000-98201600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:98200600-98201400	Enhancers	NHDF-Ad	bronchial
4	chr13:98200600-98201600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:98200600-98202000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:98200800-98201400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:98200800-98201600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr13:98201000-98201200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:98201000-98201200	Enhancers	Right Atrium	heart
10	chr13:98201000-98201600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:98201000-98201800	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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