Variant report

Variant	rs9556740
Chromosome Location	chr13:98218660-98218661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10459305	1.00[CEU][hapmap]
rs2039086	1.00[CEU][hapmap]
rs28667337	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3818590	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs9554398	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs9554402	0.86[ASN][1000 genomes]
rs9556713	1.00[CEU][hapmap]
rs9556722	1.00[CEU][hapmap]
rs9556725	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs9556736	0.81[ASN][1000 genomes]
rs9556737	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9556738	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9556739	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9556741	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9634496	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98217600-98219000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:98217800-98219000	Enhancers	Fetal Brain Male	brain
3	chr13:98217800-98220400	Weak transcription	Fetal Brain Female	brain
4	chr13:98218000-98219800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:98218600-98219400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:98218600-98220400	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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