Variant report

Variant	rs9634496
Chromosome Location	chr13:98208518-98208519
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10459305	1.00[CEU][hapmap]
rs2039086	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28667337	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3818590	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[CHD][hapmap];1.00[EUR][1000 genomes]
rs9554398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9554399	1.00[EUR][1000 genomes]
rs9554402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556713	1.00[CEU][hapmap]
rs9556722	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9556725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9556732	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9556734	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9556736	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9556737	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556738	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556739	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556740	0.86[ASN][1000 genomes]
rs9556741	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9582130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98208000-98212800	Weak transcription	Fetal Brain Male	brain
2	chr13:98208400-98212600	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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