Variant report

Variant	rs10459305
Chromosome Location	chr13:98038846-98038847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98031666..98034483-chr13:98038323..98040718,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1410644	0.94[ASN][1000 genomes]
rs2039086	1.00[CEU][hapmap]
rs2039088	0.95[ASN][1000 genomes]
rs3818590	1.00[CEU][hapmap]
rs735844	1.00[AMR][1000 genomes]
rs9300408	0.94[ASN][1000 genomes]
rs9554392	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9554398	1.00[CEU][hapmap]
rs9556703	1.00[CEU][hapmap]
rs9556709	1.00[AMR][1000 genomes]
rs9556713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9556714	0.95[ASN][1000 genomes]
rs9556715	0.87[ASN][1000 genomes]
rs9556722	1.00[CEU][hapmap]
rs9556725	1.00[CEU][hapmap]
rs9582130	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
3	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
4	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:98022000-98039000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr13:98022000-98043400	Weak transcription	Stomach Mucosa	stomach
8	chr13:98022000-98045600	Weak transcription	Colonic Mucosa	Colon
9	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:98022200-98042600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr13:98022600-98043800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr13:98023400-98041600	Strong transcription	Liver	Liver
13	chr13:98023600-98045400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:98024000-98044600	Weak transcription	GM12878-XiMat	blood
15	chr13:98025000-98039200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr13:98026400-98045200	Weak transcription	Fetal Brain Male	brain
17	chr13:98026800-98041200	Strong transcription	HepG2	liver
18	chr13:98027200-98040400	Strong transcription	Fetal Lung	lung
19	chr13:98027800-98043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:98027800-98044000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr13:98027800-98048000	Weak transcription	K562	blood
22	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
23	chr13:98028200-98046200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr13:98028200-98048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr13:98028200-98048000	Weak transcription	Fetal Kidney	kidney
26	chr13:98028400-98041000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr13:98028400-98047600	Weak transcription	HMEC	breast
28	chr13:98028600-98046800	Weak transcription	A549	lung
29	chr13:98029400-98039600	Weak transcription	Lung	lung
30	chr13:98029400-98046800	Weak transcription	NHLF	lung
31	chr13:98029600-98043600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:98030200-98039600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr13:98031800-98042800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr13:98032800-98042000	Strong transcription	Fetal Muscle Leg	muscle
35	chr13:98033200-98039400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:98033400-98039600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr13:98033400-98042800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr13:98033800-98039600	Weak transcription	Brain Angular Gyrus	brain
39	chr13:98033800-98039600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr13:98033800-98041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr13:98034400-98039600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr13:98035200-98040800	Weak transcription	Brain Substantia Nigra	brain
43	chr13:98035600-98039400	Weak transcription	NH-A	brain
44	chr13:98035600-98039600	Weak transcription	Fetal Intestine Large	intestine
45	chr13:98035600-98039800	Weak transcription	HSMM	muscle
46	chr13:98035600-98041200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr13:98035600-98043600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr13:98036000-98039400	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr13:98036600-98039000	Enhancers	Brain Anterior Caudate	brain
50	chr13:98036600-98039600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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