Variant report

Variant	rs9556703
Chromosome Location	chr13:97989743-97989744
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97963342..97965987-chr13:97989189..97990834,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10459305	1.00[CEU][hapmap]
rs11069259	0.81[CHB][hapmap]
rs11838553	0.81[CHB][hapmap]
rs1556086	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs16954019	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2039086	1.00[CEU][hapmap]
rs3818590	1.00[CEU][hapmap]
rs7333720	0.82[CHB][hapmap]
rs9554391	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9554392	0.82[ASN][1000 genomes]
rs9554398	1.00[CEU][hapmap]
rs9556709	0.85[ASN][1000 genomes]
rs9556711	0.81[CHB][hapmap]
rs9556713	1.00[CEU][hapmap]
rs9556722	1.00[CEU][hapmap]
rs9556725	1.00[CEU][hapmap]
rs9584561	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
2	chr13:97962000-97991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr13:97967400-97991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr13:97971600-97991400	Weak transcription	Stomach Mucosa	stomach
5	chr13:97971800-97991800	Weak transcription	Small Intestine	intestine
6	chr13:97976200-97990400	Weak transcription	Fetal Brain Male	brain
7	chr13:97980800-97990400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:97980800-97991800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:97981000-97991400	Weak transcription	HMEC	breast
10	chr13:97981000-97998800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:97981200-97991400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:97982000-97991400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr13:97982000-98002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:97982200-97990400	Weak transcription	Spleen	Spleen
16	chr13:97982200-97991200	Weak transcription	Fetal Kidney	kidney
17	chr13:97982600-97991200	Weak transcription	K562	blood
18	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr13:97983000-97991200	Weak transcription	Fetal Heart	heart
20	chr13:97984000-98000800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr13:97984400-97992400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr13:97985000-97991400	Weak transcription	GM12878-XiMat	blood
23	chr13:97985600-97992800	Strong transcription	HepG2	liver
24	chr13:97985800-97992000	Strong transcription	Primary B cells from cord blood	blood
25	chr13:97986200-97990200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:97986200-97991600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr13:97986200-98003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr13:97986400-97990400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr13:97986400-97991200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr13:97986400-97991200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr13:97986400-97991400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr13:97986400-97992000	Strong transcription	Primary T cells from cord blood	blood
33	chr13:97986400-97992400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:97986600-97989800	Strong transcription	Ovary	ovary
35	chr13:97986600-97991400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr13:97986600-97991600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr13:97986600-97998400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr13:97986800-97990400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:97986800-97991400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr13:97987000-97990000	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr13:97987000-97990000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr13:97987000-97990600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr13:97987000-97991200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr13:97987200-97991400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr13:97987200-97991400	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr13:97987400-97991000	Strong transcription	Placenta	Placenta
47	chr13:97987400-97991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr13:97987600-97991600	Strong transcription	Fetal Intestine Small	intestine
49	chr13:97987800-97990800	Strong transcription	Fetal Stomach	stomach
50	chr13:97987800-97991000	Weak transcription	NHLF	lung

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