Variant report

Variant	rs9554391
Chromosome Location	chr13:97993412-97993413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97874621..97876610-chr13:97992365..97995159,3	MCF-7	breast:
2	chr13:97992068..97993792-chr13:97995269..97997609,2	K562	blood:
3	chr13:97990074..97993792-chr13:97995202..97997609,3	K562	blood:
4	chr13:97992598..97996850-chr13:97999522..98001186,3	K562	blood:
5	chr13:97992267..97994078-chr13:98009808..98011602,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9554392	0.81[ASN][1000 genomes]
rs9556703	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556709	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
2	chr13:97981000-97998800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:97982000-98002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:97984000-98000800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr13:97986200-98003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr13:97986600-97998400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr13:97989200-97999000	Weak transcription	Colonic Mucosa	Colon
10	chr13:97989400-97996600	Weak transcription	Fetal Thymus	thymus
11	chr13:97989400-97999200	Weak transcription	NH-A	brain
12	chr13:97989600-97998600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr13:97989600-97999400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr13:97989800-97995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:97990000-97995600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:97990000-97998600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr13:97990600-97994600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr13:97991000-97995200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:97991000-97995200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr13:97991000-97995200	Weak transcription	Placenta	Placenta
21	chr13:97991200-97995200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:97991200-97998800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:97991400-97995000	Enhancers	Stomach Mucosa	stomach
24	chr13:97991400-97995200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr13:97991400-97995200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr13:97991400-97995400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr13:97991400-97996800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr13:97991400-98002600	Weak transcription	Fetal Brain Female	brain
29	chr13:97991600-97993600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr13:97991600-97993600	Enhancers	Fetal Intestine Large	intestine
31	chr13:97991600-97994200	Enhancers	Rectal Smooth Muscle	rectum
32	chr13:97991600-97994200	Enhancers	NHLF	lung
33	chr13:97991600-97994400	Enhancers	Brain Anterior Caudate	brain
34	chr13:97991600-97995000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr13:97991600-97995000	Weak transcription	HUVEC	blood vessel
36	chr13:97991600-97995200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr13:97991600-97996600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:97991600-97998800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr13:97991600-97999000	Weak transcription	Spleen	Spleen
40	chr13:97991600-97999600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr13:97991600-98020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr13:97991800-97994000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:97991800-97994800	Enhancers	Brain Cingulate Gyrus	brain
44	chr13:97991800-97996600	Weak transcription	Fetal Heart	heart
45	chr13:97991800-97997000	Weak transcription	HMEC	breast
46	chr13:97991800-97998600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr13:97991800-97999000	Weak transcription	Esophagus	oesophagus
48	chr13:97991800-98001000	Weak transcription	Fetal Brain Male	brain
49	chr13:97992000-97994000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:97992000-97994000	Enhancers	Fetal Stomach	stomach

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