Variant report

Variant	rs7333720
Chromosome Location	chr13:98005152-98005153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:97998178-98014027	K562	blood:	n/a	n/a
2	POLR2A	chr13:98005056-98005716	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MBNL2	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11069259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11838553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556086	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[ASN][1000 genomes]
rs16954019	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7989284	0.85[CEU][hapmap]
rs7989373	0.82[ASN][1000 genomes]
rs9556703	0.82[CHB][hapmap]
rs9556709	0.84[ASN][1000 genomes]
rs9556710	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556711	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr13:97991600-98020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr13:97992000-98006200	Weak transcription	Psoas Muscle	Psoas
5	chr13:97992800-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr13:97994200-98016200	Weak transcription	NHDF-Ad	bronchial
7	chr13:97995000-98007400	Strong transcription	Primary B cells from peripheral blood	blood
8	chr13:97995200-98007400	Strong transcription	Primary T cells from cord blood	blood
9	chr13:97995200-98007800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr13:97995200-98011000	Strong transcription	Placenta	Placenta
11	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
12	chr13:97995600-98005600	Strong transcription	Hela-S3	cervix
13	chr13:97996200-98019400	Weak transcription	GM12878-XiMat	blood
14	chr13:97997400-98006400	Weak transcription	HMEC	breast
15	chr13:97997400-98007800	Strong transcription	Adipose Nuclei	Adipose
16	chr13:97997400-98011600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:97997400-98019000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:97997600-98008400	Weak transcription	K562	blood
19	chr13:97998400-98007400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr13:97998400-98015800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:97998600-98006600	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr13:97998600-98006600	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr13:97998600-98007400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr13:97998600-98007600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:97998800-98005400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:97998800-98006000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr13:97998800-98006800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr13:97999000-98006600	Strong transcription	Skeletal Muscle Male	skeletal muscle
29	chr13:97999600-98019200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr13:97999800-98006200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:98000000-98009600	Weak transcription	Gastric	stomach
32	chr13:98000200-98006000	Weak transcription	HSMMtube	muscle
33	chr13:98000200-98008800	Weak transcription	Right Ventricle	heart
34	chr13:98001000-98007400	Strong transcription	HSMM	muscle
35	chr13:98001200-98007400	Strong transcription	Liver	Liver
36	chr13:98001400-98008400	Weak transcription	NHEK	skin
37	chr13:98002000-98007200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr13:98002200-98009600	Weak transcription	Esophagus	oesophagus
39	chr13:98002400-98006000	Weak transcription	NHLF	lung
40	chr13:98002400-98009000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr13:98002400-98027200	Weak transcription	Lung	lung
42	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
43	chr13:98002600-98013600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr13:98002600-98021600	Weak transcription	Colonic Mucosa	Colon
45	chr13:98002800-98009800	Weak transcription	Fetal Thymus	thymus
46	chr13:98003200-98021200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr13:98003400-98006600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr13:98003600-98005200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr13:98003600-98007200	Strong transcription	Fetal Intestine Large	intestine
50	chr13:98003600-98009800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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