Variant report

Variant	rs55927813
Chromosome Location	chr1:221840035-221840036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12057339	1.00[AMR][1000 genomes]
rs12059970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068699	1.00[AMR][1000 genomes]
rs12069068	1.00[AMR][1000 genomes]
rs12074253	1.00[AMR][1000 genomes]
rs12095091	1.00[AMR][1000 genomes]
rs12095764	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55952360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56906577	1.00[AMR][1000 genomes]
rs73110844	1.00[AMR][1000 genomes]
rs74145398	1.00[AMR][1000 genomes]
rs74147814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221837400-221840400	Weak transcription	HMEC	breast
2	chr1:221837400-221840600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:221837400-221840600	Weak transcription	Stomach Mucosa	stomach
4	chr1:221837400-221840600	Weak transcription	Hela-S3	cervix
5	chr1:221838000-221840600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:221839800-221840800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links