Variant report

Variant	rs56906577
Chromosome Location	chr1:221771210-221771211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12057339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059970	1.00[AMR][1000 genomes]
rs12068699	1.00[AMR][1000 genomes]
rs12069068	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074253	1.00[AMR][1000 genomes]
rs12095091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095764	1.00[AMR][1000 genomes]
rs55927813	1.00[AMR][1000 genomes]
rs55952360	1.00[AMR][1000 genomes]
rs73110844	1.00[AMR][1000 genomes]
rs74145398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147814	1.00[AMR][1000 genomes]
rs74147822	1.00[AMR][1000 genomes]
rs74147825	1.00[AMR][1000 genomes]
rs74147826	1.00[AMR][1000 genomes]
rs74147828	1.00[AMR][1000 genomes]
rs74147829	1.00[AMR][1000 genomes]
rs74147830	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1009838	chr1:221692621-221773945	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535301	chr1:221692621-221773945	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1808490	chr1:221743979-221779026	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1814250	chr1:221746140-221772404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1011037	chr1:221756526-221809552	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221770800-221772000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:221771000-221771400	Enhancers	HSMMtube	muscle
3	chr1:221771200-221771800	Enhancers	Brain Hippocampus Middle	brain
4	chr1:221771200-221773000	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:221771200-221773400	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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