Variant report

Variant	rs55928185
Chromosome Location	chr7:50446532-50446533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50439950..50441982-chr7:50444610..50447858,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12112451	0.82[AFR][1000 genomes]
rs55864329	0.95[AFR][1000 genomes]
rs56948134	0.82[AFR][1000 genomes]
rs59498249	0.90[AFR][1000 genomes]
rs59522145	0.82[AFR][1000 genomes]
rs60833957	0.82[AFR][1000 genomes]
rs73695621	0.87[AFR][1000 genomes]
rs73695635	0.82[AFR][1000 genomes]
rs73695636	0.82[AFR][1000 genomes]
rs7789106	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv522250	chr7:50442726-50454736	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50420000-50461800	Genic enhancers	Primary T cells fromperipheralblood	blood
2	chr7:50420600-50453400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
3	chr7:50428600-50447800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:50430600-50459800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr7:50431200-50460600	Strong transcription	Dnd41	blood
6	chr7:50431400-50472600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:50436800-50448200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr7:50437000-50453600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:50437200-50460200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr7:50437400-50450400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:50438000-50449800	Genic enhancers	Primary T cells from cord blood	blood
12	chr7:50438600-50453000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:50439400-50446800	Weak transcription	Lung	lung
14	chr7:50439400-50460600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:50439600-50446800	Weak transcription	Esophagus	oesophagus
16	chr7:50440000-50450400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr7:50440200-50446800	Weak transcription	Gastric	stomach
18	chr7:50440800-50461400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:50441200-50459800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:50441200-50460200	Strong transcription	Thymus	Thymus
21	chr7:50441200-50460400	Strong transcription	Primary hematopoietic stem cells	blood
22	chr7:50441200-50460400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:50441800-50459200	Strong transcription	Fetal Thymus	thymus
24	chr7:50442200-50460200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:50442400-50446800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:50442800-50446600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:50443000-50446600	Weak transcription	GM12878-XiMat	blood
28	chr7:50443800-50453600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr7:50444000-50448400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr7:50444600-50449400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:50445200-50450200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:50445400-50446600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:50445400-50447600	Weak transcription	Spleen	Spleen
34	chr7:50445400-50461400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:50445600-50446800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:50445600-50446800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr7:50445600-50448200	Weak transcription	K562	blood
38	chr7:50445600-50448400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr7:50445800-50446600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr7:50445800-50446600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr7:50445800-50446800	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr7:50445800-50447000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr7:50446000-50446600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr7:50446000-50446600	Enhancers	NHEK	skin
45	chr7:50446000-50447200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:50446000-50447400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr7:50446000-50448600	Enhancers	H1 Cell Line	embryonic stem cell
48	chr7:50446000-50448600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:50446000-50451000	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr7:50446200-50447400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links