The 2.0 version of rSNPBase

Variant report

Variant rs56948134
Chromosome Location chr7:50466927-50466928
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:50431400-50472600 Strong transcription Primary neutrophils fromperipheralblood blood
2 chr7:50447200-50467400 Weak transcription Esophagus oesophagus
3 chr7:50447200-50467400 Weak transcription Gastric stomach
4 chr7:50449200-50467400 Weak transcription Liver Liver
5 chr7:50453200-50467800 Weak transcription Pancreas Pancrea
6 chr7:50461600-50468600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr7:50461600-50472600 Strong transcription Dnd41 blood
8 chr7:50461800-50467800 Weak transcription Duodenum Mucosa Duodenum
9 chr7:50462000-50467400 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr7:50462200-50467800 Genic enhancers Primary B cells from peripheral blood blood
11 chr7:50463800-50467800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr7:50464200-50471600 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr7:50464400-50467600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
14 chr7:50464400-50470600 Genic enhancers Primary T cells fromperipheralblood blood
15 chr7:50464400-50474400 Strong transcription Thymus Thymus
16 chr7:50464600-50471200 Strong transcription Primary monocytes fromperipheralblood blood
17 chr7:50464600-50472200 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr7:50464800-50467600 Genic enhancers Primary T helper cells PMA-I stimulated --
19 chr7:50464800-50467800 Genic enhancers Primary B cells from cord blood blood
20 chr7:50464800-50472200 Strong transcription Primary hematopoietic stem cells short term culture blood
21 chr7:50464800-50472400 Strong transcription Primary hematopoietic stem cells blood
22 chr7:50464800-50472400 Strong transcription Fetal Thymus thymus
23 chr7:50465000-50467000 Genic enhancers Primary T killer memory cells from peripheral blood blood
24 chr7:50465400-50472800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr7:50465600-50467800 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
26 chr7:50465600-50470400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr7:50465600-50472600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr7:50465600-50473400 Strong transcription Primary T cells from cord blood blood
29 chr7:50465800-50467400 Strong transcription Spleen Spleen
30 chr7:50465800-50472200 Strong transcription Primary T helper naive cells from peripheral blood blood
31 chr7:50466400-50467400 Weak transcription Lung lung
32 chr7:50466400-50467400 Weak transcription GM12878-XiMat blood
33 chr7:50466400-50468800 Strong transcription Primary T helper naive cells fromperipheralblood blood
34 chr7:50466400-50469000 Strong transcription Primary T helper cells fromperipheralblood blood
35 chr7:50466400-50469000 Strong transcription Primary T regulatory cells fromperipheralblood blood
36 chr7:50466400-50474600 Weak transcription K562 blood
37 chr7:50466600-50467800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr7:50466600-50473600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
39 chr7:50466800-50468600 Strong transcription Primary T killer naive cells fromperipheralblood blood
40 chr7:50466800-50469200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015