Variant report

Variant	rs73695672
Chromosome Location	chr7:50505668-50505669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50504022..50506290-chr7:50516544..50518848,2	K562	blood:
2	chr7:50489145..50491557-chr7:50503922..50506424,2	MCF-7	breast:
3	chr7:50505120..50506790-chr7:50508425..50510796,2	K562	blood:

Variant related genes	Relation type
ENSG00000132436	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10499693	0.92[EUR][1000 genomes]
rs11575293	0.92[EUR][1000 genomes]
rs11575302	0.92[EUR][1000 genomes]
rs11575340	0.92[EUR][1000 genomes]
rs11575343	0.92[EUR][1000 genomes]
rs11575360	0.92[EUR][1000 genomes]
rs11575381	0.92[EUR][1000 genomes]
rs11575385	0.92[EUR][1000 genomes]
rs11575407	0.92[EUR][1000 genomes]
rs11575447	0.92[EUR][1000 genomes]
rs11575493	0.92[EUR][1000 genomes]
rs11575494	0.92[EUR][1000 genomes]
rs11575501	0.92[EUR][1000 genomes]
rs11575502	0.92[EUR][1000 genomes]
rs11575503	0.92[EUR][1000 genomes]
rs11575504	0.92[EUR][1000 genomes]
rs11575505	0.92[EUR][1000 genomes]
rs11575507	0.92[EUR][1000 genomes]
rs11575508	0.92[EUR][1000 genomes]
rs11575510	0.92[EUR][1000 genomes]
rs11575511	0.92[EUR][1000 genomes]
rs11575512	0.92[EUR][1000 genomes]
rs11575514	0.92[EUR][1000 genomes]
rs11575518	0.92[EUR][1000 genomes]
rs11575519	0.92[EUR][1000 genomes]
rs11575522	0.92[EUR][1000 genomes]
rs11575523	0.92[EUR][1000 genomes]
rs11575527	0.92[EUR][1000 genomes]
rs11575537	0.92[EUR][1000 genomes]
rs11575540	0.92[EUR][1000 genomes]
rs11575542	0.92[EUR][1000 genomes]
rs11575543	0.92[EUR][1000 genomes]
rs11575546	0.92[EUR][1000 genomes]
rs11575547	0.92[EUR][1000 genomes]
rs11575549	0.92[EUR][1000 genomes]
rs11978797	0.85[EUR][1000 genomes]
rs11981575	0.92[EUR][1000 genomes]
rs11982708	0.92[EUR][1000 genomes]
rs11982772	0.92[EUR][1000 genomes]
rs11982776	0.85[EUR][1000 genomes]
rs11983581	0.92[EUR][1000 genomes]
rs11983757	0.92[EUR][1000 genomes]
rs12112308	0.92[EUR][1000 genomes]
rs12113897	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2329370	0.92[EUR][1000 genomes]
rs3173669	1.00[EUR][1000 genomes]
rs55869201	0.92[EUR][1000 genomes]
rs55992615	0.92[EUR][1000 genomes]
rs56030652	0.92[EUR][1000 genomes]
rs56948134	0.83[AMR][1000 genomes]
rs57167849	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57835901	0.92[EUR][1000 genomes]
rs59150746	0.92[EUR][1000 genomes]
rs59828622	1.00[EUR][1000 genomes]
rs60833957	0.83[AMR][1000 genomes]
rs6956737	0.92[EUR][1000 genomes]
rs6975312	0.92[EUR][1000 genomes]
rs6978556	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695512	0.92[EUR][1000 genomes]
rs73695635	0.83[AMR][1000 genomes]
rs73695636	0.83[AMR][1000 genomes]
rs73695637	0.83[AMR][1000 genomes]
rs73695638	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73695639	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695640	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695641	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695643	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695661	1.00[EUR][1000 genomes]
rs73695664	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73695666	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73695667	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695668	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695669	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695670	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695671	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695673	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695681	0.92[EUR][1000 genomes]
rs73695682	0.92[EUR][1000 genomes]
rs73695683	0.92[EUR][1000 genomes]
rs73695684	0.92[EUR][1000 genomes]
rs73695700	0.92[EUR][1000 genomes]
rs73695701	0.92[EUR][1000 genomes]
rs73695702	0.92[EUR][1000 genomes]
rs73697528	0.92[EUR][1000 genomes]
rs73697574	0.92[EUR][1000 genomes]
rs930707	0.92[EUR][1000 genomes]
rs9942578	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50486200-50513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:50493400-50505800	Weak transcription	Thymus	Thymus
3	chr7:50495200-50505800	Weak transcription	Fetal Intestine Large	intestine
4	chr7:50495200-50513000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:50495200-50517200	Weak transcription	Stomach Mucosa	stomach
6	chr7:50495600-50513800	Weak transcription	HepG2	liver
7	chr7:50496000-50513000	Weak transcription	Gastric	stomach
8	chr7:50496200-50517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:50496800-50505800	Weak transcription	GM12878-XiMat	blood
10	chr7:50498000-50506800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:50499400-50506000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:50499400-50513000	Weak transcription	Psoas Muscle	Psoas
13	chr7:50499800-50506400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr7:50500000-50513400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:50500600-50513000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:50501000-50517400	Weak transcription	Esophagus	oesophagus
17	chr7:50502000-50505800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:50502200-50513600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:50502400-50517200	Weak transcription	Small Intestine	intestine
20	chr7:50503000-50513000	Weak transcription	Spleen	Spleen
21	chr7:50503200-50506000	Weak transcription	Primary B cells from cord blood	blood
22	chr7:50503400-50505800	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:50503400-50507400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr7:50503600-50505800	Weak transcription	Aorta	Aorta
25	chr7:50503600-50512800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:50503800-50505800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:50503800-50505800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:50503800-50505800	Weak transcription	Fetal Stomach	stomach
29	chr7:50503800-50505800	Weak transcription	Lung	lung
30	chr7:50503800-50505800	Weak transcription	Ovary	ovary
31	chr7:50503800-50511600	Weak transcription	K562	blood
32	chr7:50503800-50512400	Weak transcription	Placenta	Placenta
33	chr7:50504000-50505800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:50504000-50505800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:50504000-50505800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:50504000-50505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:50504000-50506000	Weak transcription	Fetal Brain Male	brain
38	chr7:50504200-50505800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:50504200-50505800	Weak transcription	Brain Anterior Caudate	brain
40	chr7:50504200-50505800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:50504200-50505800	Weak transcription	Fetal Kidney	kidney
42	chr7:50504200-50505800	Weak transcription	HSMM	muscle
43	chr7:50504200-50506000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:50504200-50506000	Weak transcription	Adipose Nuclei	Adipose
45	chr7:50504200-50506400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:50504200-50508400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:50504200-50511400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:50504200-50513200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:50504200-50513800	Weak transcription	NH-A	brain
50	chr7:50504400-50505800	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links