Variant report

Variant	rs11978797
Chromosome Location	chr7:50533290-50533291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10499693	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575293	0.92[EUR][1000 genomes]
rs11575302	0.92[EUR][1000 genomes]
rs11575340	0.92[EUR][1000 genomes]
rs11575343	0.92[EUR][1000 genomes]
rs11575360	0.92[EUR][1000 genomes]
rs11575381	0.92[EUR][1000 genomes]
rs11575385	0.92[EUR][1000 genomes]
rs11575407	0.92[EUR][1000 genomes]
rs11575447	0.92[EUR][1000 genomes]
rs11575493	0.92[EUR][1000 genomes]
rs11575494	0.92[EUR][1000 genomes]
rs11575501	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575502	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575503	0.92[EUR][1000 genomes]
rs11575504	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575505	0.92[EUR][1000 genomes]
rs11575507	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575508	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575510	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575511	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575512	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575514	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575518	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575519	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575522	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575523	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575527	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575531	0.83[AFR][1000 genomes]
rs11575535	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11575537	0.92[EUR][1000 genomes]
rs11575540	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575542	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575543	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575546	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575547	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11575549	0.92[EUR][1000 genomes]
rs11981575	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11982708	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11982772	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11982776	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11983581	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11983757	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12112308	0.92[EUR][1000 genomes]
rs2329370	0.92[EUR][1000 genomes]
rs3173669	0.85[EUR][1000 genomes]
rs55869201	0.92[EUR][1000 genomes]
rs55992615	0.92[EUR][1000 genomes]
rs56030652	0.92[EUR][1000 genomes]
rs57167849	0.85[EUR][1000 genomes]
rs57835901	0.92[EUR][1000 genomes]
rs59150746	0.92[EUR][1000 genomes]
rs59828622	0.85[EUR][1000 genomes]
rs6956737	0.92[EUR][1000 genomes]
rs6975312	0.92[EUR][1000 genomes]
rs6978556	0.85[EUR][1000 genomes]
rs73695512	0.92[EUR][1000 genomes]
rs73695639	0.85[EUR][1000 genomes]
rs73695640	0.85[EUR][1000 genomes]
rs73695641	0.85[EUR][1000 genomes]
rs73695643	0.85[EUR][1000 genomes]
rs73695661	0.85[EUR][1000 genomes]
rs73695664	0.85[EUR][1000 genomes]
rs73695666	0.85[EUR][1000 genomes]
rs73695667	0.85[EUR][1000 genomes]
rs73695668	0.85[EUR][1000 genomes]
rs73695669	0.85[EUR][1000 genomes]
rs73695670	0.85[EUR][1000 genomes]
rs73695671	0.85[EUR][1000 genomes]
rs73695672	0.85[EUR][1000 genomes]
rs73695673	0.85[EUR][1000 genomes]
rs73695681	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73695682	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73695683	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73695684	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73695700	0.92[EUR][1000 genomes]
rs73695701	0.92[EUR][1000 genomes]
rs73695702	0.92[EUR][1000 genomes]
rs73697528	0.92[EUR][1000 genomes]
rs73697574	0.92[EUR][1000 genomes]
rs930707	0.92[EUR][1000 genomes]
rs9942578	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1026081	chr7:50525900-50538184	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50518800-50535400	Weak transcription	Pancreas	Pancrea
2	chr7:50518800-50535600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:50518800-50535600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:50518800-50535600	Weak transcription	HepG2	liver
5	chr7:50528800-50533800	Strong transcription	Duodenum Mucosa	Duodenum
6	chr7:50528800-50535400	Weak transcription	Colonic Mucosa	Colon
7	chr7:50529200-50535600	Strong transcription	Fetal Intestine Large	intestine
8	chr7:50529600-50535400	Strong transcription	Fetal Intestine Small	intestine
9	chr7:50530400-50533600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:50530400-50535400	Weak transcription	HUVEC	blood vessel
11	chr7:50531000-50535400	Weak transcription	Hela-S3	cervix
12	chr7:50532200-50535400	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:50532400-50535400	Weak transcription	Gastric	stomach
14	chr7:50532800-50535600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr7:50533200-50535400	Weak transcription	Liver	Liver

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