Variant report

Variant	rs57167849
Chromosome Location	chr7:50496085-50496086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50486332..50488429-chr7:50495573..50497153,2	K562	blood:
2	chr7:50491516..50493659-chr7:50493993..50496799,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10499693	0.92[EUR][1000 genomes]
rs11575293	0.92[EUR][1000 genomes]
rs11575302	0.92[EUR][1000 genomes]
rs11575340	0.92[EUR][1000 genomes]
rs11575343	0.92[EUR][1000 genomes]
rs11575360	0.92[EUR][1000 genomes]
rs11575381	0.92[EUR][1000 genomes]
rs11575385	0.92[EUR][1000 genomes]
rs11575407	0.92[EUR][1000 genomes]
rs11575447	0.92[EUR][1000 genomes]
rs11575493	0.92[EUR][1000 genomes]
rs11575494	0.92[EUR][1000 genomes]
rs11575501	0.92[EUR][1000 genomes]
rs11575502	0.92[EUR][1000 genomes]
rs11575503	0.92[EUR][1000 genomes]
rs11575504	0.92[EUR][1000 genomes]
rs11575505	0.92[EUR][1000 genomes]
rs11575507	0.92[EUR][1000 genomes]
rs11575508	0.92[EUR][1000 genomes]
rs11575510	0.92[EUR][1000 genomes]
rs11575511	0.92[EUR][1000 genomes]
rs11575512	0.92[EUR][1000 genomes]
rs11575514	0.92[EUR][1000 genomes]
rs11575518	0.92[EUR][1000 genomes]
rs11575519	0.92[EUR][1000 genomes]
rs11575522	0.92[EUR][1000 genomes]
rs11575523	0.92[EUR][1000 genomes]
rs11575527	0.92[EUR][1000 genomes]
rs11575537	0.92[EUR][1000 genomes]
rs11575540	0.92[EUR][1000 genomes]
rs11575542	0.92[EUR][1000 genomes]
rs11575543	0.92[EUR][1000 genomes]
rs11575546	0.92[EUR][1000 genomes]
rs11575547	0.92[EUR][1000 genomes]
rs11575549	0.92[EUR][1000 genomes]
rs11978797	0.85[EUR][1000 genomes]
rs11981575	0.92[EUR][1000 genomes]
rs11982708	0.92[EUR][1000 genomes]
rs11982772	0.92[EUR][1000 genomes]
rs11982776	0.85[EUR][1000 genomes]
rs11983581	0.92[EUR][1000 genomes]
rs11983757	0.92[EUR][1000 genomes]
rs12112308	0.92[EUR][1000 genomes]
rs12112451	0.81[AMR][1000 genomes]
rs12113897	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2329370	0.92[EUR][1000 genomes]
rs3173669	1.00[EUR][1000 genomes]
rs55864329	1.00[AMR][1000 genomes]
rs55869201	0.92[EUR][1000 genomes]
rs55992615	0.92[EUR][1000 genomes]
rs56030652	0.92[EUR][1000 genomes]
rs56948134	0.90[AMR][1000 genomes]
rs57835901	0.92[EUR][1000 genomes]
rs59150746	0.92[EUR][1000 genomes]
rs59498249	0.89[AMR][1000 genomes]
rs59828622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60833957	0.90[AMR][1000 genomes]
rs6956737	0.92[EUR][1000 genomes]
rs6975312	0.92[EUR][1000 genomes]
rs6978556	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695512	0.92[EUR][1000 genomes]
rs73695621	1.00[AMR][1000 genomes]
rs73695635	0.90[AMR][1000 genomes]
rs73695636	0.90[AMR][1000 genomes]
rs73695637	0.90[AMR][1000 genomes]
rs73695638	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73695639	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695640	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695641	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695643	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695661	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695666	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695667	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695668	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695669	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695670	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695671	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695672	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73695673	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695681	0.92[EUR][1000 genomes]
rs73695682	0.92[EUR][1000 genomes]
rs73695683	0.92[EUR][1000 genomes]
rs73695684	0.92[EUR][1000 genomes]
rs73695700	0.92[EUR][1000 genomes]
rs73695701	0.92[EUR][1000 genomes]
rs73695702	0.92[EUR][1000 genomes]
rs73697528	0.92[EUR][1000 genomes]
rs73697574	0.92[EUR][1000 genomes]
rs7789106	0.90[AMR][1000 genomes]
rs930707	0.92[EUR][1000 genomes]
rs9942578	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50486200-50513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:50493400-50505800	Weak transcription	Thymus	Thymus
3	chr7:50495000-50496600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:50495200-50505800	Weak transcription	Fetal Intestine Large	intestine
5	chr7:50495200-50513000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:50495200-50517200	Weak transcription	Stomach Mucosa	stomach
7	chr7:50495600-50513800	Weak transcription	HepG2	liver
8	chr7:50496000-50496200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:50496000-50513000	Weak transcription	Gastric	stomach

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