Variant report

Variant	rs6956737
Chromosome Location	chr7:50620781-50620782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10499693	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575293	1.00[EUR][1000 genomes]
rs11575302	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575340	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575360	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575381	1.00[EUR][1000 genomes]
rs11575385	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575407	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575447	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575493	1.00[EUR][1000 genomes]
rs11575494	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575501	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575502	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575503	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575504	1.00[EUR][1000 genomes]
rs11575505	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575507	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575508	1.00[EUR][1000 genomes]
rs11575510	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575511	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575512	1.00[EUR][1000 genomes]
rs11575514	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575518	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575519	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575522	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575523	1.00[EUR][1000 genomes]
rs11575527	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575537	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575540	1.00[EUR][1000 genomes]
rs11575542	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11575546	1.00[EUR][1000 genomes]
rs11575547	1.00[EUR][1000 genomes]
rs11575549	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11978797	0.92[EUR][1000 genomes]
rs11981575	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11982708	1.00[EUR][1000 genomes]
rs11982772	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11982776	0.92[EUR][1000 genomes]
rs11983581	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11983757	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12112308	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12113897	0.84[EUR][1000 genomes]
rs2329370	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3173669	0.92[EUR][1000 genomes]
rs55869201	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55992615	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56030652	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56951986	1.00[AMR][1000 genomes]
rs57167849	0.92[EUR][1000 genomes]
rs57835901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57927451	1.00[AMR][1000 genomes]
rs59150746	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59828622	0.92[EUR][1000 genomes]
rs6975312	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6978556	0.92[EUR][1000 genomes]
rs73695512	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695638	0.84[EUR][1000 genomes]
rs73695639	0.92[EUR][1000 genomes]
rs73695640	0.92[EUR][1000 genomes]
rs73695641	0.92[EUR][1000 genomes]
rs73695643	0.92[EUR][1000 genomes]
rs73695661	0.92[EUR][1000 genomes]
rs73695664	0.92[EUR][1000 genomes]
rs73695666	0.92[EUR][1000 genomes]
rs73695667	0.92[EUR][1000 genomes]
rs73695668	0.92[EUR][1000 genomes]
rs73695669	0.92[EUR][1000 genomes]
rs73695670	0.92[EUR][1000 genomes]
rs73695671	0.92[EUR][1000 genomes]
rs73695672	0.92[EUR][1000 genomes]
rs73695673	0.92[EUR][1000 genomes]
rs73695681	1.00[EUR][1000 genomes]
rs73695682	1.00[EUR][1000 genomes]
rs73695683	1.00[EUR][1000 genomes]
rs73695684	1.00[EUR][1000 genomes]
rs73695700	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695701	1.00[EUR][1000 genomes]
rs73695702	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73697528	1.00[EUR][1000 genomes]
rs73697574	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs930707	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9942578	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1015758	chr7:50565404-50768153	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1023228	chr7:50573214-50777634	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv429750	chr7:50603534-50622712	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv429751	chr7:50607353-50622712	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1032882	chr7:50611138-50775257	Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv538834	chr7:50611138-50775257	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50601600-50631400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:50611000-50631800	Weak transcription	Colonic Mucosa	Colon
3	chr7:50611600-50623800	Weak transcription	Liver	Liver
4	chr7:50613000-50621600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:50619400-50624400	Genic enhancers	Fetal Intestine Small	intestine
6	chr7:50619400-50628200	Enhancers	HepG2	liver
7	chr7:50619600-50621000	Enhancers	Gastric	stomach
8	chr7:50619600-50627800	Enhancers	Fetal Intestine Large	intestine
9	chr7:50620000-50620800	Enhancers	Esophagus	oesophagus
10	chr7:50620000-50620800	Enhancers	Lung	lung
11	chr7:50620000-50621000	Enhancers	Pancreas	Pancrea
12	chr7:50620400-50624600	Weak transcription	Fetal Lung	lung
13	chr7:50620600-50620800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:50620600-50624200	Weak transcription	Stomach Mucosa	stomach
15	chr7:50620600-50625000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links