Variant report

Variant	rs73695637
Chromosome Location	chr7:50472738-50472739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50468922..50471406-chr7:50471643..50473189,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12112451	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12113897	1.00[AMR][1000 genomes]
rs55864329	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56948134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167849	0.90[AMR][1000 genomes]
rs59498249	1.00[EUR][1000 genomes]
rs59522145	0.95[AFR][1000 genomes]
rs59828622	0.90[AMR][1000 genomes]
rs60833957	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978556	0.91[AMR][1000 genomes]
rs73695621	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695635	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695638	1.00[AMR][1000 genomes]
rs73695639	1.00[AMR][1000 genomes]
rs73695640	1.00[AMR][1000 genomes]
rs73695641	1.00[AMR][1000 genomes]
rs73695643	1.00[AMR][1000 genomes]
rs73695661	0.91[AMR][1000 genomes]
rs73695664	0.90[AMR][1000 genomes]
rs73695666	0.90[AMR][1000 genomes]
rs73695667	0.91[AMR][1000 genomes]
rs73695668	0.91[AMR][1000 genomes]
rs73695669	0.91[AMR][1000 genomes]
rs73695670	0.91[AMR][1000 genomes]
rs73695671	0.91[AMR][1000 genomes]
rs73695672	0.83[AMR][1000 genomes]
rs73695673	0.91[AMR][1000 genomes]
rs7789106	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50464400-50474400	Strong transcription	Thymus	Thymus
2	chr7:50465400-50472800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:50465600-50473400	Strong transcription	Primary T cells from cord blood	blood
4	chr7:50466400-50474600	Weak transcription	K562	blood
5	chr7:50466600-50473600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:50467000-50477200	Weak transcription	Colonic Mucosa	Colon
7	chr7:50468200-50479800	Weak transcription	Gastric	stomach
8	chr7:50469000-50476800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:50469000-50480600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:50470200-50472800	Weak transcription	Spleen	Spleen
11	chr7:50470600-50485600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:50470800-50477400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:50471000-50472800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:50471200-50474200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:50471400-50474400	Genic enhancers	Primary B cells from cord blood	blood
16	chr7:50471400-50474600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:50472200-50473000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:50472200-50473400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:50472200-50474000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:50472200-50474600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:50472200-50483800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:50472400-50472800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:50472400-50473000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
24	chr7:50472400-50473000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr7:50472400-50473200	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr7:50472400-50474000	Genic enhancers	Fetal Thymus	thymus
27	chr7:50472400-50486400	Enhancers	Primary B cells from peripheral blood	blood
28	chr7:50472600-50472800	Enhancers	GM12878-XiMat	blood
29	chr7:50472600-50473200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
30	chr7:50472600-50473200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:50472600-50473600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr7:50472600-50475400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:50472600-50477400	Weak transcription	Dnd41	blood
34	chr7:50472600-50479000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links