Variant report

Variant	rs55928393
Chromosome Location	chr6:37625788-37625789
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37624881..37626670-chr6:37628535..37630431,2	MCF-7	breast:
2	chr6:37625457..37629220-chr6:37629233..37634339,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL353597.1-9	chr6:37625758-37625906	NONHSAT112282

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1738451	1.00[EUR][1000 genomes]
rs2776914	1.00[EUR][1000 genomes]
rs41462250	1.00[EUR][1000 genomes]
rs57562221	1.00[EUR][1000 genomes]
rs73734231	1.00[EUR][1000 genomes]
rs931648	1.00[EUR][1000 genomes]
rs9632490	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37618200-37631600	Weak transcription	Gastric	stomach
2	chr6:37620200-37632200	Weak transcription	Right Atrium	heart
3	chr6:37621200-37627400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:37621400-37630800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:37621400-37630800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:37621600-37631400	Weak transcription	Fetal Brain Male	brain
7	chr6:37622200-37630800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:37622200-37630800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:37622400-37632400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:37622400-37633000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:37622600-37627600	Weak transcription	Fetal Brain Female	brain
12	chr6:37622600-37630600	Weak transcription	NHLF	lung
13	chr6:37622800-37625800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:37623200-37626000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:37623200-37626600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:37623200-37626800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:37623400-37628800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:37623800-37626600	Strong transcription	Fetal Stomach	stomach
19	chr6:37624000-37628800	Weak transcription	Colonic Mucosa	Colon
20	chr6:37624600-37626000	Enhancers	Hela-S3	cervix
21	chr6:37624600-37627000	Enhancers	NHEK	skin
22	chr6:37624800-37626000	Enhancers	A549	lung
23	chr6:37624800-37627200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:37625000-37625800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:37625000-37626000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:37625000-37626000	Enhancers	NH-A	brain
27	chr6:37625000-37626200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:37625000-37626200	Enhancers	Esophagus	oesophagus
29	chr6:37625000-37626400	Enhancers	HMEC	breast
30	chr6:37625000-37627000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:37625200-37625800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:37625200-37625800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:37625200-37625800	Strong transcription	Aorta	Aorta
34	chr6:37625200-37626000	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:37625200-37626000	Strong transcription	Ovary	ovary
36	chr6:37625200-37627600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr6:37625200-37628000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:37625600-37625800	Weak transcription	Pancreas	Pancrea
39	chr6:37625600-37627600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:37625600-37628600	Weak transcription	NHDF-Ad	bronchial
41	chr6:37625600-37630600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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