Variant report

Variant	rs9632490
Chromosome Location	chr6:37690920-37690921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11966394	1.00[MEX][hapmap]
rs1738451	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs55928393	1.00[EUR][1000 genomes]
rs57562221	1.00[EUR][1000 genomes]
rs73734231	1.00[EUR][1000 genomes]
rs9462350	1.00[MEX][hapmap]
rs9470657	1.00[MEX][hapmap]
rs9470659	1.00[MEX][hapmap]
rs9470716	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37674000-37693800	Weak transcription	Right Atrium	heart
2	chr6:37686800-37691400	Weak transcription	A549	lung
3	chr6:37686800-37692600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:37689600-37693400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:37690200-37692200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:37690200-37693400	Weak transcription	NHEK	skin
7	chr6:37690600-37691400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:37690600-37692000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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