Variant report

Variant	rs9470659
Chromosome Location	chr6:37646967-37646968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37550595..37552590-chr6:37645353..37646991,2	MCF-7	breast:
2	chr6:37638146..37640998-chr6:37645797..37648381,3	K562	blood:
3	chr6:37642624..37644809-chr6:37645655..37648588,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11966394	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1342979	1.00[AMR][1000 genomes]
rs1738451	1.00[MEX][hapmap]
rs2646937	1.00[MEX][hapmap]
rs2797783	1.00[EUR][1000 genomes]
rs73413369	1.00[EUR][1000 genomes]
rs73415463	1.00[EUR][1000 genomes]
rs73730806	1.00[EUR][1000 genomes]
rs7767232	1.00[EUR][1000 genomes]
rs804815	1.00[EUR][1000 genomes]
rs804818	1.00[EUR][1000 genomes]
rs804823	1.00[AMR][1000 genomes]
rs804842	1.00[AMR][1000 genomes]
rs9462348	1.00[EUR][1000 genomes]
rs9462350	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9462351	1.00[EUR][1000 genomes]
rs9470657	1.00[MEX][hapmap]
rs9470658	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470664	1.00[AMR][1000 genomes]
rs9470716	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37629600-37659600	Weak transcription	Ovary	ovary
2	chr6:37631800-37647600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:37633600-37647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:37641200-37647000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:37641600-37647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:37642000-37647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:37642400-37647400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37643800-37647200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:37643800-37647400	Weak transcription	Brain Angular Gyrus	brain
10	chr6:37644200-37647000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:37644200-37647200	Weak transcription	Brain Anterior Caudate	brain
12	chr6:37644200-37647800	Weak transcription	Fetal Brain Female	brain
13	chr6:37645200-37648000	Enhancers	Brain Hippocampus Middle	brain
14	chr6:37645200-37651400	Enhancers	Fetal Brain Male	brain
15	chr6:37645400-37647600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:37645600-37647400	Weak transcription	Brain Germinal Matrix	brain
17	chr6:37646000-37649600	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:37646000-37650400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:37646200-37647200	Enhancers	GM12878-XiMat	blood
20	chr6:37646200-37647800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:37646400-37647200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:37646600-37649000	Enhancers	Primary B cells from cord blood	blood
23	chr6:37646600-37649400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:37646800-37648000	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links