Variant report

Variant	rs9470664
Chromosome Location	chr6:37654222-37654223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37650720..37654671-chr6:37670149..37673658,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1342979	1.00[AMR][1000 genomes]
rs804823	1.00[AMR][1000 genomes]
rs804842	1.00[AMR][1000 genomes]
rs9470658	1.00[AMR][1000 genomes]
rs9470659	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37629600-37659600	Weak transcription	Ovary	ovary
2	chr6:37649000-37656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:37649800-37656400	Weak transcription	Fetal Brain Female	brain
4	chr6:37649800-37659600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:37650000-37656000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:37650000-37656600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:37650400-37659200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:37651400-37655600	Weak transcription	Fetal Brain Male	brain
9	chr6:37651400-37655800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:37651400-37655800	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:37651600-37655800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:37651800-37657200	Weak transcription	Brain Anterior Caudate	brain
13	chr6:37652000-37659000	Weak transcription	NHLF	lung
14	chr6:37652200-37654600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:37652200-37659400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:37652600-37663600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:37653400-37659600	Weak transcription	HSMMtube	muscle
18	chr6:37653400-37660000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:37653600-37656000	Weak transcription	Fetal Stomach	stomach
20	chr6:37654200-37659000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:37654200-37659200	Weak transcription	Hela-S3	cervix

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