Variant report

Variant	rs11966394
Chromosome Location	chr6:37640797-37640798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11969659	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1738451	1.00[MEX][hapmap]
rs2646937	1.00[MEX][hapmap]
rs73415408	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462350	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9470657	1.00[MEX][hapmap]
rs9470659	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9470716	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37629400-37646000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:37629600-37641000	Weak transcription	Fetal Brain Female	brain
3	chr6:37629600-37659600	Weak transcription	Ovary	ovary
4	chr6:37631800-37647600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:37633600-37641400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:37633600-37647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:37636000-37641000	Weak transcription	Fetal Brain Male	brain
8	chr6:37637400-37644200	Enhancers	Brain Hippocampus Middle	brain
9	chr6:37637800-37641600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:37638000-37643800	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:37639600-37640800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:37640000-37643800	Enhancers	Brain Substantia Nigra	brain
13	chr6:37640200-37641800	Enhancers	Brain Anterior Caudate	brain
14	chr6:37640200-37644200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr6:37640400-37642800	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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