Variant report

Variant	rs73415408
Chromosome Location	chr6:37641942-37641943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37618357..37620078-chr6:37641465..37644399,2	K562	blood:
2	chr6:37536709..37539290-chr6:37640782..37642683,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11966394	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11969659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37629400-37646000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:37629600-37659600	Weak transcription	Ovary	ovary
3	chr6:37631800-37647600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:37633600-37647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:37637400-37644200	Enhancers	Brain Hippocampus Middle	brain
6	chr6:37638000-37643800	Enhancers	Brain Cingulate Gyrus	brain
7	chr6:37640000-37643800	Enhancers	Brain Substantia Nigra	brain
8	chr6:37640200-37644200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:37640400-37642800	Enhancers	Brain Angular Gyrus	brain
10	chr6:37640800-37642000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:37640800-37642400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37640800-37642400	Enhancers	Brain Germinal Matrix	brain
13	chr6:37640800-37642600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:37641000-37642000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:37641000-37642600	Enhancers	Fetal Brain Female	brain
16	chr6:37641000-37642800	Enhancers	Fetal Brain Male	brain
17	chr6:37641200-37642600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:37641200-37642600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:37641200-37642600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:37641200-37647000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:37641600-37642200	Enhancers	Fetal Muscle Trunk	muscle
22	chr6:37641600-37642800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:37641600-37647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:37641800-37642000	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr6:37641800-37642400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links