Variant report

Variant	rs11969659
Chromosome Location	chr6:37643686-37643687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37618357..37620078-chr6:37641465..37644399,2	K562	blood:
2	chr6:37642624..37644809-chr6:37645655..37648588,2	MCF-7	breast:
3	chr6:37643484..37645290-chr6:37662982..37665737,2	K562	blood:
4	chr6:37618578..37621552-chr6:37642899..37645409,2	K562	blood:
5	chr6:37536721..37538637-chr6:37643593..37645341,2	K562	blood:
6	chr6:37641973..37645574-chr6:37660233..37663242,3	K562	blood:

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11966394	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37629400-37646000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:37629600-37659600	Weak transcription	Ovary	ovary
3	chr6:37631800-37647600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:37633600-37647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:37637400-37644200	Enhancers	Brain Hippocampus Middle	brain
6	chr6:37638000-37643800	Enhancers	Brain Cingulate Gyrus	brain
7	chr6:37640000-37643800	Enhancers	Brain Substantia Nigra	brain
8	chr6:37640200-37644200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:37641200-37647000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:37641600-37647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:37642000-37645400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:37642000-37647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:37642400-37644200	Enhancers	Brain Anterior Caudate	brain
14	chr6:37642400-37645000	Weak transcription	Brain Germinal Matrix	brain
15	chr6:37642400-37647400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:37642600-37644400	Weak transcription	GM12878-XiMat	blood
17	chr6:37642600-37646000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:37642600-37646600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:37642800-37645200	Weak transcription	Fetal Brain Male	brain
20	chr6:37643200-37643800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:37643200-37643800	Enhancers	Brain Angular Gyrus	brain
22	chr6:37643400-37644200	Enhancers	Fetal Muscle Leg	muscle
23	chr6:37643600-37644200	Enhancers	Fetal Brain Female	brain

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