Variant report

Variant	rs9470657
Chromosome Location	chr6:37633583-37633584
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:37633014-37633664	U2OS	brain:	n/a	n/a
2	KAP1	chr6:37633049-37633663	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37633354..37635003-chr6:37637145..37640134,2	K562	blood:

Variant related genes	Relation type
MDGA1	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11966394	1.00[MEX][hapmap]
rs16890045	1.00[CEU][hapmap]
rs16890068	1.00[CEU][hapmap]
rs1738451	1.00[MEX][hapmap]
rs2646937	1.00[MEX][hapmap]
rs73415404	0.96[EUR][1000 genomes]
rs9462350	1.00[MEX][hapmap]
rs9470656	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470659	1.00[MEX][hapmap]
rs9470716	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37626000-37635000	Weak transcription	A549	lung
2	chr6:37629200-37635000	Weak transcription	Aorta	Aorta
3	chr6:37629400-37646000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:37629600-37641000	Weak transcription	Fetal Brain Female	brain
5	chr6:37629600-37659600	Weak transcription	Ovary	ovary
6	chr6:37630400-37634600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:37630600-37633600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:37630600-37633800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:37630800-37633600	Enhancers	Brain Angular Gyrus	brain
10	chr6:37630800-37633600	Enhancers	Brain Hippocampus Middle	brain
11	chr6:37630800-37633800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:37631000-37633600	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:37631000-37633600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:37631600-37633600	Enhancers	Gastric	stomach
15	chr6:37631600-37635000	Weak transcription	Osteobl	bone
16	chr6:37631800-37633600	Enhancers	Fetal Muscle Leg	muscle
17	chr6:37631800-37634600	Weak transcription	NHLF	lung
18	chr6:37631800-37634800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:37631800-37635000	Weak transcription	NH-A	brain
20	chr6:37631800-37635000	Weak transcription	NHDF-Ad	bronchial
21	chr6:37631800-37647600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:37632000-37633600	Enhancers	Brain Substantia Nigra	brain
23	chr6:37632000-37634800	Weak transcription	Fetal Brain Male	brain
24	chr6:37632200-37633600	Enhancers	Right Atrium	heart
25	chr6:37632200-37633800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:37632400-37633800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:37632600-37633600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:37632600-37633600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:37632600-37634800	Weak transcription	HSMMtube	muscle
30	chr6:37632800-37633600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:37632800-37633600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:37632800-37633600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:37632800-37633600	Enhancers	Placenta	Placenta
34	chr6:37632800-37633600	Enhancers	K562	blood
35	chr6:37632800-37633800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:37632800-37633800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:37632800-37633800	Enhancers	Fetal Heart	heart
38	chr6:37633000-37633600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr6:37633000-37633600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr6:37633000-37633600	Enhancers	Right Ventricle	heart
41	chr6:37633000-37633800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr6:37633000-37633800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:37633200-37633600	Bivalent Enhancer	HepG2	liver
44	chr6:37633200-37633800	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:37633200-37634000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:37633200-37637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:37633400-37633600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
48	chr6:37633400-37633600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:37633400-37633600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:37633400-37639000	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links