Variant report

Variant	rs55931237
Chromosome Location	chr11:8702809-8702810
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:8700198-8712489	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr11:8700848-8711808	HepG2	liver:	n/a	n/a
3	POLR2A	chr11:8701867-8711080	SK-N-MC	brain:	n/a	n/a
4	POLR2A	chr11:8700610-8712688	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:8638813..8643565-chr11:8702244..8705036,4	K562	blood:
2	chr11:8701773..8703653-chr11:8846645..8848951,2	MCF-7	breast:
3	chr11:8353033..8355366-chr11:8702107..8703940,2	MCF-7	breast:
4	chr11:8701660..8705909-chr11:8738922..8746228,9	MCF-7	breast:
5	chr11:8702288..8704069-chr11:8716251..8718190,2	MCF-7	breast:
6	chr11:8702711..8705833-chr11:8931238..8933056,3	K562	blood:
7	chr11:8674451..8677275-chr11:8701396..8703424,3	K562	blood:
8	chr11:8702257..8705886-chr11:8931185..8934379,5	MCF-7	breast:
9	chr11:8701763..8703828-chr11:8934006..8936271,2	K562	blood:
10	chr11:8701282..8703151-chr11:8791566..8793541,2	K562	blood:
11	chr11:8675317..8677275-chr11:8701534..8703424,2	K562	blood:
12	chr11:8699371..8704185-chr11:8984475..8986762,4	K562	blood:
13	chr11:8701293..8704221-chr11:8890079..8892942,2	MCF-7	breast:

No data

Variant related genes	Relation type
SNORA45	TF binding region
SNORA3	TF binding region
RPL27A	TF binding region
ENSG00000166444	Chromatin interaction
ENSG00000254860	Chromatin interaction
ENSG00000166436	Chromatin interaction
ENSG00000166452	Chromatin interaction
ENSG00000175348	Chromatin interaction

rs_ID	r²[population]
rs4520599	0.87[AMR][1000 genomes]
rs57312436	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59752192	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59942149	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60449221	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61685207	0.92[AFR][1000 genomes]
rs74055113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935091	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8690000-8703000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:8693600-8703000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:8693600-8703200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:8693600-8703200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:8693600-8703200	Weak transcription	Fetal Lung	lung
7	chr11:8693600-8703400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:8693600-8703400	Weak transcription	Ovary	ovary
9	chr11:8693800-8703000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:8693800-8703000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:8693800-8703000	Weak transcription	Hela-S3	cervix
12	chr11:8693800-8703200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:8693800-8703200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:8693800-8703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:8693800-8703200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:8693800-8703200	Weak transcription	Brain Substantia Nigra	brain
17	chr11:8693800-8703200	Weak transcription	Colonic Mucosa	Colon
18	chr11:8693800-8703200	Weak transcription	Fetal Brain Female	brain
19	chr11:8693800-8703400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:8693800-8703400	Weak transcription	Brain Germinal Matrix	brain
21	chr11:8693800-8703600	Weak transcription	Spleen	Spleen
22	chr11:8694000-8703000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:8694000-8703000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:8694000-8703000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:8694000-8703000	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:8694000-8703200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:8694000-8703200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:8694000-8703200	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:8694000-8703200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:8694000-8703200	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:8694000-8703200	Weak transcription	Fetal Brain Male	brain
32	chr11:8694000-8703200	Weak transcription	Fetal Kidney	kidney
33	chr11:8694000-8703200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:8694000-8703200	Weak transcription	Thymus	Thymus
35	chr11:8694000-8703200	Weak transcription	NH-A	brain
36	chr11:8694000-8703200	Weak transcription	Osteobl	bone
37	chr11:8694000-8703400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:8694000-8703400	Weak transcription	Esophagus	oesophagus
39	chr11:8694000-8703400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr11:8694200-8703000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:8694200-8703000	Weak transcription	HUVEC	blood vessel
42	chr11:8694200-8703200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:8694200-8703200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:8694200-8703200	Weak transcription	HMEC	breast
45	chr11:8694200-8703200	Weak transcription	HSMMtube	muscle
46	chr11:8694200-8703400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:8694400-8703400	Weak transcription	Left Ventricle	heart
48	chr11:8695600-8703200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:8696000-8703200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:8696200-8703200	Weak transcription	Fetal Intestine Small	intestine

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