Variant report

Variant	rs57312436
Chromosome Location	chr11:8723058-8723059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:41)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:41 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:8722655-8726112	HepG2	liver:	n/a	n/a
2	TBL1XR1	chr11:8723021-8723511	K562	blood:	n/a	n/a
3	POLR2A	chr11:8722664-8723149	ECC-1	luminal epithelium:	n/a	n/a
4	KAP1	chr11:8722716-8723146	K562	blood:	n/a	n/a
5	POLR2A	chr11:8722894-8723123	H1-hESC	embryonic stem cell:	n/a	n/a
6	RCOR1	chr11:8722778-8723236	K562	blood:	n/a	n/a
7	POLR2A	chr11:8722622-8723285	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr11:8722529-8723738	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr11:8722658-8723173	K562	blood:	n/a	n/a
10	TBP	chr11:8722479-8723188	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF1	chr11:8722654-8723143	K562	blood:	n/a	n/a
12	POLR2A	chr11:8722560-8723462	H1-hESC	embryonic stem cell:	n/a	n/a
13	EP300	chr11:8722604-8723171	K562	blood:	n/a	n/a
14	ZMIZ1	chr11:8722692-8723283	K562	blood:	n/a	n/a
15	ARID3A	chr11:8722625-8723059	K562	blood:	n/a	n/a
16	SP4	chr11:8722647-8723122	H1-hESC	embryonic stem cell:	n/a	n/a
17	JUND	chr11:8722838-8723166	K562	blood:	n/a	n/a
18	MAX	chr11:8722641-8723187	K562	blood:	n/a	n/a
19	POLR2A	chr11:8722588-8723111	K562	blood:	n/a	n/a
20	POLR2A	chr11:8722705-8723348	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr11:8722658-8726169	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr11:8722630-8723148	K562	blood:	n/a	n/a
23	IRF1	chr11:8722872-8723198	K562	blood:	n/a	n/a
24	MYC	chr11:8722612-8723204	K562	blood:	n/a	n/a
25	TAF1	chr11:8722656-8723184	H1-hESC	embryonic stem cell:	n/a	n/a
26	TBP	chr11:8722498-8723211	K562	blood:	n/a	n/a
27	MAZ	chr11:8722705-8723248	K562	blood:	n/a	n/a
28	ELF1	chr11:8722606-8723103	K562	blood:	n/a	n/a
29	POLR2A	chr11:8722652-8723239	K562	blood:	n/a	n/a
30	E2F6	chr11:8722461-8723069	H1-hESC	embryonic stem cell:	n/a	n/a
31	ZC3H11A	chr11:8722652-8723153	K562	blood:	n/a	n/a
32	NFYB	chr11:8722771-8723086	K562	blood:	n/a	n/a
33	CREB1	chr11:8722609-8723213	H1-hESC	embryonic stem cell:	n/a	n/a
34	TAF1	chr11:8722912-8723178	H1-hESC	embryonic stem cell:	n/a	n/a
35	MYC	chr11:8722605-8723078	K562	blood:	n/a	n/a
36	POLR2A	chr11:8722887-8723167	H1-hESC	embryonic stem cell:	n/a	n/a
37	HEY1	chr11:8722644-8723174	K562	blood:	n/a	n/a
38	POLR2A	chr11:8722444-8723385	K562	blood:	n/a	n/a
39	IRF1	chr11:8722635-8723102	K562	blood:	n/a	n/a
40	MAX	chr11:8722458-8723218	K562	blood:	n/a	n/a
41	SP4	chr11:8722543-8723225	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8722287..8724924-chr11:8738555..8741145,2	K562	blood:

No data

Variant related genes	Relation type
ST5	TF binding region
ENSG00000166444	Chromatin interaction

rs_ID	r²[population]
rs4520599	0.87[AMR][1000 genomes]
rs55931237	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59752192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59942149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60449221	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61685207	0.82[AFR][1000 genomes]
rs74055113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8711800-8724200	Weak transcription	Thymus	Thymus
2	chr11:8713200-8730000	Strong transcription	Liver	Liver
3	chr11:8713600-8723400	Strong transcription	Esophagus	oesophagus
4	chr11:8715400-8733600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:8716200-8725000	Weak transcription	Fetal Brain Male	brain
6	chr11:8719400-8728600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:8719600-8724000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:8719600-8737000	Weak transcription	Hela-S3	cervix
9	chr11:8719800-8724200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:8720000-8738200	Weak transcription	Fetal Kidney	kidney
11	chr11:8720200-8724000	Genic enhancers	Fetal Muscle Trunk	muscle
12	chr11:8720200-8731200	Strong transcription	Fetal Intestine Small	intestine
13	chr11:8720400-8723400	Genic enhancers	Fetal Muscle Leg	muscle
14	chr11:8720400-8723800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:8720400-8728800	Weak transcription	Fetal Heart	heart
16	chr11:8720600-8723800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:8720600-8724000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:8720600-8729600	Strong transcription	Fetal Intestine Large	intestine
19	chr11:8721000-8728800	Weak transcription	Fetal Thymus	thymus
20	chr11:8721200-8723200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:8721400-8724000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:8721600-8724000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:8721600-8724000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:8721600-8729200	Weak transcription	Fetal Brain Female	brain
25	chr11:8721600-8737000	Strong transcription	Lung	lung
26	chr11:8721800-8723200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:8721800-8723600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr11:8721800-8724000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:8721800-8724400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:8721800-8731000	Weak transcription	Small Intestine	intestine
31	chr11:8721800-8736200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:8722000-8723400	Weak transcription	Aorta	Aorta
33	chr11:8722000-8723400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:8722000-8723400	Weak transcription	Right Atrium	heart
35	chr11:8722000-8723600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr11:8722000-8724200	Weak transcription	Colonic Mucosa	Colon
37	chr11:8722000-8725600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:8722000-8725600	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:8722000-8728800	Weak transcription	Psoas Muscle	Psoas
40	chr11:8722000-8730400	Strong transcription	Fetal Lung	lung
41	chr11:8722000-8735800	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr11:8722000-8738800	Weak transcription	A549	lung
43	chr11:8722200-8723200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:8722200-8723200	Weak transcription	NHEK	skin
45	chr11:8722200-8723400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:8722200-8723400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:8722200-8723400	Weak transcription	Pancreas	Pancrea
48	chr11:8722200-8723400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:8722200-8723600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:8722200-8723600	Weak transcription	Duodenum Mucosa	Duodenum

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