The 2.0 version of rSNPBase

Variant report

Variant rs55931436
Chromosome Location chr3:52365223-52365224
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52328200-52366000 Weak transcription Brain Angular Gyrus brain
2 chr3:52328800-52367600 Weak transcription Brain Substantia Nigra brain
3 chr3:52330400-52378600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr3:52344600-52378600 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr3:52352000-52365800 Weak transcription Aorta Aorta
6 chr3:52352000-52367600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr3:52352000-52379800 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr3:52352200-52370800 Weak transcription Primary hematopoietic stem cells blood
9 chr3:52352200-52379000 Weak transcription Colonic Mucosa Colon
10 chr3:52352200-52382000 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr3:52352200-52384600 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr3:52352400-52366000 Weak transcription Primary B cells from peripheral blood blood
13 chr3:52352400-52366000 Weak transcription Adipose Nuclei Adipose
14 chr3:52352400-52366200 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr3:52352600-52365400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr3:52352600-52373400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr3:52352600-52379400 Weak transcription Pancreas Pancrea
18 chr3:52352800-52365800 Weak transcription Brain Anterior Caudate brain
19 chr3:52352800-52365800 Weak transcription Gastric stomach
20 chr3:52353400-52377400 Weak transcription Fetal Muscle Leg muscle
21 chr3:52354400-52379800 Weak transcription Esophagus oesophagus
22 chr3:52354800-52384000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr3:52357000-52366200 Weak transcription Primary B cells from cord blood blood
24 chr3:52358200-52372000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr3:52358400-52365800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr3:52358400-52370200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr3:52358400-52380400 Weak transcription Ovary ovary
28 chr3:52360400-52376200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr3:52361000-52367800 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr3:52361400-52366200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr3:52361400-52366200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr3:52361800-52368400 Strong transcription Primary T helper naive cells fromperipheralblood blood
33 chr3:52362200-52375000 Weak transcription Fetal Thymus thymus
34 chr3:52362400-52378200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr3:52362800-52365400 Weak transcription Fetal Intestine Large intestine
36 chr3:52362800-52366000 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr3:52362800-52366000 Weak transcription Thymus Thymus
38 chr3:52362800-52366200 Weak transcription Rectal Smooth Muscle rectum
39 chr3:52362800-52378600 Weak transcription Brain Cingulate Gyrus brain
40 chr3:52363400-52365800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr3:52364200-52367800 Strong transcription Fetal Stomach stomach
42 chr3:52364200-52368600 Strong transcription Primary T cells from cord blood blood
43 chr3:52364200-52375800 Weak transcription GM12878-XiMat blood
44 chr3:52364200-52383000 Weak transcription Fetal Lung lung
45 chr3:52364400-52366600 Strong transcription Stomach Smooth Muscle stomach
46 chr3:52364400-52367800 Strong transcription Fetal Intestine Small intestine
47 chr3:52364400-52379400 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr3:52364600-52365800 Weak transcription Monocytes-CD14+_RO01746 blood
49 chr3:52364600-52366600 Strong transcription Lung lung
50 chr3:52364600-52367600 Weak transcription Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015