Variant report

Variant	rs55934154
Chromosome Location	chr15:50684781-50684782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50646317..50649319-chr15:50681822..50686701,6	MCF-7	breast:
2	chr15:50646276..50650534-chr15:50680183..50686065,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10083714	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10152574	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11491094	0.93[ASN][1000 genomes]
rs55697237	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55950921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58089987	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74012366	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs74012367	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs74012371	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74012372	0.95[ASN][1000 genomes]
rs8029259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8029439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8032042	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8032520	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8032602	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8032640	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8033413	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8033932	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8040420	0.94[AFR][1000 genomes]
rs9652452	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
4	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
5	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50677000-50690400	Weak transcription	Right Atrium	heart
2	chr15:50681400-50685600	Enhancers	Placenta	Placenta
3	chr15:50681800-50684800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:50682800-50685400	Enhancers	Hela-S3	cervix
5	chr15:50682800-50685600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:50683000-50685200	Enhancers	Fetal Muscle Leg	muscle
7	chr15:50683800-50703800	Weak transcription	K562	blood
8	chr15:50684200-50685400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:50684400-50685200	Weak transcription	GM12878-XiMat	blood
10	chr15:50684600-50685000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:50684600-50685400	Enhancers	NHDF-Ad	bronchial

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