The 2.0 version of rSNPBase

Variant report

Variant rs8040420
Chromosome Location chr15:50661980-50661981
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:50648000-50667600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr15:50648200-50664400 Weak transcription Lung lung
3 chr15:50649200-50664400 Weak transcription Right Ventricle heart
4 chr15:50649400-50664000 Weak transcription Rectal Smooth Muscle rectum
5 chr15:50649800-50664200 Weak transcription Small Intestine intestine
6 chr15:50649800-50664600 Weak transcription Psoas Muscle Psoas
7 chr15:50650000-50663000 Weak transcription Fetal Brain Male brain
8 chr15:50650000-50663600 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr15:50650200-50662600 Weak transcription NH-A brain
10 chr15:50650200-50664000 Weak transcription Spleen Spleen
11 chr15:50651400-50664600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr15:50653000-50662600 Weak transcription Brain Angular Gyrus brain
13 chr15:50653000-50664600 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr15:50653200-50662800 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr15:50653200-50666800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr15:50653400-50662600 Weak transcription Fetal Intestine Small intestine
17 chr15:50654200-50664400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr15:50654200-50665000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr15:50654400-50662800 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr15:50654400-50662800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr15:50654400-50666400 Weak transcription Brain Cingulate Gyrus brain
22 chr15:50654400-50670600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr15:50654600-50663000 Weak transcription Brain Anterior Caudate brain
24 chr15:50654600-50664000 Weak transcription Brain Inferior Temporal Lobe brain
25 chr15:50654600-50664400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr15:50654600-50664400 Weak transcription Fetal Lung lung
27 chr15:50654600-50664400 Weak transcription Osteobl bone
28 chr15:50654600-50664600 Weak transcription Primary T helper cells fromperipheralblood blood
29 chr15:50654600-50666000 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr15:50654800-50662800 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr15:50655000-50662200 Weak transcription Primary hematopoietic stem cells blood
32 chr15:50655200-50663600 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr15:50655200-50664400 Weak transcription HMEC breast
34 chr15:50655400-50662800 Weak transcription NHLF lung
35 chr15:50655400-50664600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr15:50655600-50662200 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr15:50655600-50664600 Weak transcription Fetal Intestine Large intestine
38 chr15:50655600-50665200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr15:50655600-50665400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr15:50655800-50664200 Weak transcription Brain Hippocampus Middle brain
41 chr15:50655800-50666000 Weak transcription Brain Germinal Matrix brain
42 chr15:50655800-50666000 Weak transcription Left Ventricle heart
43 chr15:50656000-50662000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr15:50656000-50663000 Weak transcription ES-I3 Cell Line embryonic stem cell
45 chr15:50656000-50664400 Weak transcription Ovary ovary
46 chr15:50656000-50664800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr15:50656000-50665800 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr15:50656000-50674200 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr15:50656200-50664400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr15:50656200-50665000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015