Variant report

Variant	rs55936059
Chromosome Location	chr12:4966124-4966125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11614374	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831080	0.88[ASN][1000 genomes]
rs16931738	1.00[ASN][1000 genomes]
rs16931772	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931774	1.00[ASN][1000 genomes]
rs17177689	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17784177	1.00[ASN][1000 genomes]
rs2302355	1.00[ASN][1000 genomes]
rs73048603	1.00[ASN][1000 genomes]
rs74056145	1.00[ASN][1000 genomes]
rs7956904	1.00[ASN][1000 genomes]
rs7960689	1.00[ASN][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4929200-4966600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:4929400-4966600	Weak transcription	Brain Angular Gyrus	brain
3	chr12:4939600-4966600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:4943000-4966800	Weak transcription	Fetal Brain Male	brain
5	chr12:4948400-4966800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:4960000-4966800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:4960800-4966800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:4961200-4966600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr12:4962000-4966600	Weak transcription	Fetal Brain Female	brain
10	chr12:4963400-4966800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:4964800-4966800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr12:4965000-4966600	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:4965000-4966800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:4965000-4966800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr12:4965000-4967200	Weak transcription	Right Atrium	heart
16	chr12:4965200-4966600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr12:4965400-4966600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:4965400-4967200	Weak transcription	Fetal Heart	heart
19	chr12:4965600-4966600	Weak transcription	GM12878-XiMat	blood
20	chr12:4965600-4966800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr12:4965600-4966800	Weak transcription	Right Ventricle	heart
22	chr12:4965600-4967200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr12:4966000-4966200	Enhancers	Primary B cells from cord blood	blood
24	chr12:4966000-4966800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr12:4966000-4966800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr12:4966000-4967000	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links