Variant report

Variant	rs16931772
Chromosome Location	chr12:4961003-4961004
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10849132	1.00[JPT][hapmap]
rs10849135	1.00[JPT][hapmap]
rs11063325	1.00[JPT][hapmap]
rs11063330	1.00[JPT][hapmap]
rs11614374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12367189	1.00[JPT][hapmap]
rs16931634	1.00[JPT][hapmap]
rs16931738	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931774	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17784177	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860346	1.00[JPT][hapmap]
rs2302355	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55936059	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048603	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056145	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956904	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960689	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4929200-4966600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:4929400-4966600	Weak transcription	Brain Angular Gyrus	brain
3	chr12:4935800-4965000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:4939600-4966600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:4943000-4966800	Weak transcription	Fetal Brain Male	brain
6	chr12:4948400-4966800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:4957400-4961400	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:4958600-4963200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:4958800-4962200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr12:4958800-4963400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr12:4959000-4961800	Strong transcription	Fetal Stomach	stomach
12	chr12:4959000-4963800	Weak transcription	Fetal Intestine Small	intestine
13	chr12:4959200-4962800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr12:4960000-4961200	Strong transcription	Pancreatic Islets	Pancreatic Islet
15	chr12:4960000-4961600	Strong transcription	Fetal Muscle Trunk	muscle
16	chr12:4960000-4966800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr12:4960200-4962000	Strong transcription	Fetal Brain Female	brain
18	chr12:4960800-4963200	Weak transcription	Brain Germinal Matrix	brain
19	chr12:4960800-4966800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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