Variant report

Variant	rs55939924
Chromosome Location	chr2:30433787-30433788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11681599	1.00[ASN][1000 genomes]
rs35326918	1.00[ASN][1000 genomes]
rs72785889	1.00[ASN][1000 genomes]
rs72787710	1.00[ASN][1000 genomes]
rs72787711	1.00[ASN][1000 genomes]
rs72787712	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv873768	chr2:30403762-30436249	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30426400-30439800	Weak transcription	Right Ventricle	heart
2	chr2:30428000-30436200	Weak transcription	Left Ventricle	heart
3	chr2:30431800-30436600	Weak transcription	K562	blood
4	chr2:30431800-30439600	Weak transcription	Right Atrium	heart
5	chr2:30432200-30444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr2:30433000-30435800	Weak transcription	Fetal Heart	heart
7	chr2:30433000-30439800	Weak transcription	Fetal Thymus	thymus
8	chr2:30433200-30439000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:30433200-30444200	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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