Variant report

Variant	rs72785889
Chromosome Location	chr2:30417646-30417647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11681599	1.00[ASN][1000 genomes]
rs35326918	1.00[ASN][1000 genomes]
rs55939924	1.00[ASN][1000 genomes]
rs72787710	1.00[ASN][1000 genomes]
rs72787711	1.00[ASN][1000 genomes]
rs72787712	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv873768	chr2:30403762-30436249	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv438281	chr2:30406902-30418294	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30415000-30431400	Weak transcription	Right Atrium	heart
2	chr2:30415200-30419800	Enhancers	K562	blood
3	chr2:30416000-30417800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:30416400-30418200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:30416400-30418400	Enhancers	Adipose Nuclei	Adipose
6	chr2:30416600-30420600	Weak transcription	Gastric	stomach
7	chr2:30416600-30420600	Weak transcription	Spleen	Spleen
8	chr2:30417000-30418200	Enhancers	Fetal Heart	heart
9	chr2:30417400-30417800	Enhancers	Left Ventricle	heart
10	chr2:30417600-30426000	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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