Variant report

Variant	rs55943502
Chromosome Location	chr10:4798916-4798917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11816368	1.00[AMR][1000 genomes]
rs56884859	1.00[AMR][1000 genomes]
rs57042805	1.00[AMR][1000 genomes]
rs58392847	1.00[AMR][1000 genomes]
rs74111688	1.00[AMR][1000 genomes]
rs74111690	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111694	1.00[AMR][1000 genomes]
rs74111695	1.00[AMR][1000 genomes]
rs74111698	1.00[AMR][1000 genomes]
rs74111699	1.00[AMR][1000 genomes]
rs74111701	1.00[AMR][1000 genomes]
rs74113604	1.00[AMR][1000 genomes]
rs74113612	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv549880	chr10:4781029-4810561	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5620	chr10:4787958-4814661	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4791600-4799400	Weak transcription	HMEC	breast
2	chr10:4792000-4799400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:4793200-4799400	Weak transcription	NHDF-Ad	bronchial
4	chr10:4796600-4800200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:4797800-4799800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:4797800-4799800	Weak transcription	HSMM	muscle
7	chr10:4797800-4800000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:4797800-4800200	Weak transcription	Osteobl	bone
9	chr10:4798200-4799800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:4798200-4802600	Weak transcription	HUVEC	blood vessel
11	chr10:4798200-4803000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:4798400-4803400	Weak transcription	NHLF	lung
13	chr10:4798600-4800400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:4798800-4800200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links