Variant report

Variant	rs74111694
Chromosome Location	chr10:4791249-4791250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11816368	1.00[AMR][1000 genomes]
rs55943502	1.00[AMR][1000 genomes]
rs56884859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57042805	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58392847	1.00[AMR][1000 genomes]
rs7074452	0.90[AFR][1000 genomes]
rs74111688	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111695	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111698	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111699	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111701	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74113604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv549880	chr10:4781029-4810561	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5620	chr10:4787958-4814661	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4783400-4793400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:4786600-4791400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:4787000-4793400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4788400-4791400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:4788800-4792400	Weak transcription	NHDF-Ad	bronchial
6	chr10:4791000-4791600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:4791200-4791600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:4791200-4791600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:4791200-4791600	Enhancers	HMEC	breast
10	chr10:4791200-4791800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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