Variant report

Variant	rs55948131
Chromosome Location	chr6:44318356-44318357
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56858241	0.87[AFR][1000 genomes]
rs59341714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61601740	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439583	0.85[AMR][1000 genomes]
rs7738177	0.83[EUR][1000 genomes]
rs9472253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44317400-44318600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:44317600-44318400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:44317600-44318600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:44317600-44318600	Enhancers	Liver	Liver
5	chr6:44317800-44318400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:44317800-44318400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:44317800-44318600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:44317800-44318600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:44317800-44318600	Enhancers	HepG2	liver
10	chr6:44318000-44318400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:44318200-44318400	Enhancers	Stomach Mucosa	stomach
12	chr6:44318200-44323400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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