Variant report

Variant	rs61601740
Chromosome Location	chr6:44309062-44309063
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:44308961-44309246	SH-SY5Y	brain:	n/a	n/a
2	EP300	chr6:44308929-44311084	SK-N-SH	brain:	n/a	chr6:44310169-44310183
3	POLR2A	chr6:44308914-44309223	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44225090..44228269-chr6:44308012..44310883,3	K562	blood:
2	chr6:44238398..44239903-chr6:44307869..44309407,2	MCF-7	breast:
3	chr6:44237156..44239963-chr6:44308095..44310360,2	MCF-7	breast:
4	chr6:44236483..44238229-chr6:44307349..44309648,2	K562	blood:
5	chr6:44307648..44309372-chr6:44321890..44323452,2	K562	blood:
6	chr6:44307682..44310665-chr6:44355077..44358723,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
SPATS1	TF binding region
ENSG00000157593	Chromatin interaction
ENSG00000096401	Chromatin interaction
ENSG00000178233	Chromatin interaction
ENSG00000146232	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55948131	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56858241	0.85[AFR][1000 genomes]
rs59341714	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439545	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439551	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439581	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7738177	0.83[EUR][1000 genomes]
rs9472253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44302600-44309600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:44305400-44310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:44306200-44309200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:44306800-44309200	Weak transcription	K562	blood
5	chr6:44307800-44309800	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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