Variant report

Variant	rs55954036
Chromosome Location	chr6:4208119-4208120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf201-11	chr6:4205538-4208376	NONHSAT107350

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55645023	1.00[AMR][1000 genomes]
rs56020009	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56163885	1.00[AMR][1000 genomes]
rs56221707	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56928713	1.00[AMR][1000 genomes]
rs58316736	1.00[AMR][1000 genomes]
rs58511621	1.00[AMR][1000 genomes]
rs58922374	1.00[AMR][1000 genomes]
rs59787593	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60324766	1.00[AMR][1000 genomes]
rs61258183	1.00[AMR][1000 genomes]
rs61707542	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71555845	1.00[AMR][1000 genomes]
rs73717464	1.00[AMR][1000 genomes]
rs73717466	1.00[AMR][1000 genomes]
rs73717469	1.00[AMR][1000 genomes]
rs73717475	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717481	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717483	1.00[AMR][1000 genomes]
rs73717487	1.00[AMR][1000 genomes]
rs73717493	1.00[AMR][1000 genomes]
rs73723635	1.00[AMR][1000 genomes]
rs9504023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4207400-4208600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:4207600-4208600	Enhancers	Fetal Stomach	stomach
3	chr6:4207600-4209200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:4207600-4209800	Enhancers	Adipose Nuclei	Adipose
5	chr6:4207600-4209800	Enhancers	Stomach Smooth Muscle	stomach
6	chr6:4207800-4208400	Enhancers	Placenta	Placenta
7	chr6:4207800-4209600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:4207800-4210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:4207800-4211200	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:4208000-4208800	Enhancers	Fetal Muscle Leg	muscle
11	chr6:4208000-4208800	Enhancers	Left Ventricle	heart

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