Variant report

Variant	rs73717469
Chromosome Location	chr6:4172118-4172119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4170820..4172896-chr6:4177996..4180681,2	K562	blood:
2	chr6:4113549..4115331-chr6:4170875..4173732,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf201-9	chr6:4171516-4172848	NONHSAT107337

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55645023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55954036	1.00[AMR][1000 genomes]
rs56020009	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56163885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56221707	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56928713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58316736	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58511621	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58922374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59787593	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60324766	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61258183	1.00[AMR][1000 genomes]
rs61707542	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717475	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717478	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717481	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717483	1.00[AMR][1000 genomes]
rs73717487	1.00[AMR][1000 genomes]
rs73717493	1.00[AMR][1000 genomes]
rs73723635	1.00[AMR][1000 genomes]
rs9504023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv441981	chr6:4170526-4174296	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4164400-4182200	Weak transcription	Left Ventricle	heart
2	chr6:4169400-4182400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:4170000-4172400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:4170000-4172400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:4171000-4172400	Weak transcription	K562	blood
6	chr6:4171600-4172600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:4172000-4172800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:4172000-4172800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:4172000-4173600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:4172000-4173800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:4172000-4174200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:4172000-4174200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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