Variant report

Variant	rs55954105
Chromosome Location	chr11:34230908-34230909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34214181..34215695-chr11:34230468..34232938,2	MCF-7	breast:
2	chr11:34229883..34232389-chr11:34271160..34273308,2	K562	blood:
3	chr11:34229441..34231710-chr11:34255472..34258756,3	MCF-7	breast:
4	chr11:34230274..34232780-chr11:34235455..34237065,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1022722	0.98[ASN][1000 genomes]
rs11032552	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032554	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11032555	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032556	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032557	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032558	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032559	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032561	0.80[ASN][1000 genomes]
rs11032562	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11604651	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12224748	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12271968	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272398	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286749	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12417958	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12418582	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12420504	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1883959	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473900	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2611088	0.81[ASN][1000 genomes]
rs2611089	0.96[ASN][1000 genomes]
rs2746628	0.96[ASN][1000 genomes]
rs2746629	0.96[ASN][1000 genomes]
rs56126876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120814	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7124297	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7949361	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3356396	chr11:34230201-34232749	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3327404	chr11:34230426-34232399	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv515783	chr11:34230517-34237292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
2	chr11:34215000-34235800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:34215600-34232600	Weak transcription	Fetal Brain Female	brain
4	chr11:34218800-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:34219000-34240800	Weak transcription	Left Ventricle	heart
6	chr11:34219200-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:34225800-34235000	Weak transcription	Liver	Liver
8	chr11:34226200-34236600	Weak transcription	Gastric	stomach
9	chr11:34226600-34244600	Weak transcription	Small Intestine	intestine
10	chr11:34227000-34232400	Enhancers	A549	lung
11	chr11:34227000-34235000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:34227000-34236400	Weak transcription	HSMM	muscle
13	chr11:34227000-34236400	Weak transcription	Osteobl	bone
14	chr11:34227000-34236600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:34227000-34244400	Weak transcription	Pancreas	Pancrea
16	chr11:34227400-34236600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:34227800-34231200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:34228400-34236400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:34228600-34231400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:34228600-34235400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:34228600-34236600	Weak transcription	Lung	lung
22	chr11:34228600-34236600	Weak transcription	Right Atrium	heart
23	chr11:34228800-34231600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:34228800-34237200	Enhancers	HepG2	liver
25	chr11:34229000-34231600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:34229000-34235000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:34229200-34235800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:34229200-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:34229600-34234200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:34230000-34231600	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:34230000-34234000	Weak transcription	Fetal Lung	lung
32	chr11:34230200-34231000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr11:34230200-34231600	Weak transcription	Brain Substantia Nigra	brain
34	chr11:34230200-34231600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:34230200-34234200	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:34230200-34235200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:34230200-34236600	Weak transcription	HSMMtube	muscle
38	chr11:34230400-34231800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:34230400-34235000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:34230400-34236200	Weak transcription	NHEK	skin
41	chr11:34230600-34231600	Weak transcription	Fetal Stomach	stomach
42	chr11:34230600-34234400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:34230600-34235000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:34230600-34235200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:34230600-34235200	Weak transcription	Hela-S3	cervix
46	chr11:34230600-34235200	Weak transcription	NH-A	brain
47	chr11:34230600-34235600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:34230600-34236400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:34230600-34238600	Weak transcription	Psoas Muscle	Psoas
50	chr11:34230600-34244400	Weak transcription	Right Ventricle	heart

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