Variant report

Variant	rs2611088
Chromosome Location	chr11:34235023-34235024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34213210..34216201-chr11:34233621..34235955,2	MCF-7	breast:
2	chr11:34227935..34229540-chr11:34234431..34236788,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1022722	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10768052	0.91[EUR][1000 genomes]
rs10836161	0.85[EUR][1000 genomes]
rs11032552	0.81[ASN][1000 genomes]
rs11032554	0.81[ASN][1000 genomes]
rs11032555	0.82[ASN][1000 genomes]
rs11032556	0.83[ASN][1000 genomes]
rs11032557	0.82[ASN][1000 genomes]
rs11032558	0.83[ASN][1000 genomes]
rs11032559	0.83[ASN][1000 genomes]
rs11032561	0.95[ASN][1000 genomes]
rs11032562	0.81[ASN][1000 genomes]
rs11604651	0.83[ASN][1000 genomes]
rs12224748	0.83[ASN][1000 genomes]
rs12271968	0.81[ASN][1000 genomes]
rs12272398	0.81[ASN][1000 genomes]
rs12286749	0.80[ASN][1000 genomes]
rs12417958	0.82[ASN][1000 genomes]
rs12418582	0.98[ASN][1000 genomes]
rs1883959	0.81[ASN][1000 genomes]
rs2179829	0.91[EUR][1000 genomes]
rs2611089	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746628	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2746629	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2746632	0.84[EUR][1000 genomes]
rs4755362	0.85[EUR][1000 genomes]
rs4755363	0.85[EUR][1000 genomes]
rs4756116	0.82[EUR][1000 genomes]
rs4756117	0.85[EUR][1000 genomes]
rs55954105	0.81[ASN][1000 genomes]
rs56126876	0.81[ASN][1000 genomes]
rs6484701	0.85[EUR][1000 genomes]
rs7118745	0.85[EUR][1000 genomes]
rs7120814	0.84[ASN][1000 genomes]
rs7124297	0.84[ASN][1000 genomes]
rs7927282	0.83[EUR][1000 genomes]
rs7941795	0.85[EUR][1000 genomes]
rs7949361	0.83[ASN][1000 genomes]
rs9783356	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv515783	chr11:34230517-34237292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
2	chr11:34215000-34235800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:34218800-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:34219000-34240800	Weak transcription	Left Ventricle	heart
5	chr11:34219200-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:34226200-34236600	Weak transcription	Gastric	stomach
7	chr11:34226600-34244600	Weak transcription	Small Intestine	intestine
8	chr11:34227000-34236400	Weak transcription	HSMM	muscle
9	chr11:34227000-34236400	Weak transcription	Osteobl	bone
10	chr11:34227000-34236600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:34227000-34244400	Weak transcription	Pancreas	Pancrea
12	chr11:34227400-34236600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:34228400-34236400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:34228600-34235400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:34228600-34236600	Weak transcription	Lung	lung
16	chr11:34228600-34236600	Weak transcription	Right Atrium	heart
17	chr11:34228800-34237200	Enhancers	HepG2	liver
18	chr11:34229200-34235800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:34229200-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:34230200-34235200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:34230200-34236600	Weak transcription	HSMMtube	muscle
22	chr11:34230400-34236200	Weak transcription	NHEK	skin
23	chr11:34230600-34235200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:34230600-34235200	Weak transcription	Hela-S3	cervix
25	chr11:34230600-34235200	Weak transcription	NH-A	brain
26	chr11:34230600-34235600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:34230600-34236400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:34230600-34238600	Weak transcription	Psoas Muscle	Psoas
29	chr11:34230600-34244400	Weak transcription	Right Ventricle	heart
30	chr11:34230800-34236400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:34230800-34241000	Weak transcription	Placenta	Placenta
32	chr11:34232400-34236600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:34232400-34236600	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:34232400-34241800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:34234000-34236000	Enhancers	Fetal Lung	lung
36	chr11:34234000-34236600	Enhancers	A549	lung
37	chr11:34234000-34237000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:34234800-34236000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:34234800-34236800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:34234800-34241600	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:34235000-34235400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:34235000-34235800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:34235000-34236800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:34235000-34237000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:34235000-34237200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:34235000-34237200	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links