Variant report

Variant	rs2179829
Chromosome Location	chr11:34238449-34238450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1022722	0.83[EUR][1000 genomes]
rs10768052	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836161	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs167054	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611088	0.91[EUR][1000 genomes]
rs2611089	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2746628	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2746629	0.92[CEU][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2746632	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4755362	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4755363	0.87[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4756116	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756117	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484701	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7118745	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7927282	0.91[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7941795	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9783356	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1050413	chr11:34237529-34259820	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34219000-34240800	Weak transcription	Left Ventricle	heart
2	chr11:34226600-34244600	Weak transcription	Small Intestine	intestine
3	chr11:34227000-34244400	Weak transcription	Pancreas	Pancrea
4	chr11:34229200-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:34230600-34238600	Weak transcription	Psoas Muscle	Psoas
6	chr11:34230600-34244400	Weak transcription	Right Ventricle	heart
7	chr11:34230800-34241000	Weak transcription	Placenta	Placenta
8	chr11:34232400-34241800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:34234800-34241600	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:34235600-34245600	Weak transcription	Spleen	Spleen
11	chr11:34236800-34238600	Weak transcription	Gastric	stomach
12	chr11:34236800-34241200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:34236800-34241800	Weak transcription	Lung	lung
14	chr11:34236800-34244200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:34236800-34244400	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:34237000-34239400	Weak transcription	Fetal Lung	lung
17	chr11:34237000-34241200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:34237000-34241200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:34237000-34241200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:34237000-34244200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:34237000-34244200	Weak transcription	Osteobl	bone
22	chr11:34237000-34244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:34237000-34244400	Weak transcription	Right Atrium	heart
24	chr11:34237000-34244400	Weak transcription	HSMMtube	muscle
25	chr11:34237200-34240000	Weak transcription	HepG2	liver
26	chr11:34237200-34241200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:34237200-34243800	Weak transcription	Liver	Liver
28	chr11:34237200-34255600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:34238200-34238600	Weak transcription	A549	lung

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