Variant report

Variant	rs2746632
Chromosome Location	chr11:34230034-34230035
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34229883..34232389-chr11:34271160..34273308,2	K562	blood:
2	chr11:34229441..34231710-chr11:34255472..34258756,3	MCF-7	breast:
3	chr11:34224684..34227193-chr11:34228730..34230616,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1022722	0.94[EUR][1000 genomes]
rs10768052	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836161	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs167054	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2179829	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2611088	0.84[EUR][1000 genomes]
rs2611089	0.83[EUR][1000 genomes]
rs2746628	0.84[EUR][1000 genomes]
rs2746629	0.84[EUR][1000 genomes]
rs4755362	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4755363	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4756116	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4756117	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6484701	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118745	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7927282	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7941795	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9783356	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
2	chr11:34215000-34235800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:34215600-34232600	Weak transcription	Fetal Brain Female	brain
4	chr11:34218800-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:34219000-34240800	Weak transcription	Left Ventricle	heart
6	chr11:34219200-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:34224800-34230200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:34225800-34235000	Weak transcription	Liver	Liver
9	chr11:34226200-34236600	Weak transcription	Gastric	stomach
10	chr11:34226600-34244600	Weak transcription	Small Intestine	intestine
11	chr11:34227000-34232400	Enhancers	A549	lung
12	chr11:34227000-34235000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:34227000-34236400	Weak transcription	HSMM	muscle
14	chr11:34227000-34236400	Weak transcription	Osteobl	bone
15	chr11:34227000-34236600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:34227000-34244400	Weak transcription	Pancreas	Pancrea
17	chr11:34227400-34230200	Enhancers	Brain Substantia Nigra	brain
18	chr11:34227400-34230200	Weak transcription	NH-A	brain
19	chr11:34227400-34236600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:34227600-34230600	Enhancers	Fetal Stomach	stomach
21	chr11:34227800-34231200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:34228000-34230200	Enhancers	Fetal Muscle Leg	muscle
23	chr11:34228000-34230200	Enhancers	Fetal Thymus	thymus
24	chr11:34228000-34230600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr11:34228000-34230800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:34228200-34230200	Enhancers	Primary hematopoietic stem cells	blood
27	chr11:34228200-34230600	Enhancers	Psoas Muscle	Psoas
28	chr11:34228200-34230800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr11:34228400-34230800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:34228400-34236400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:34228600-34231400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:34228600-34235400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:34228600-34236600	Weak transcription	Lung	lung
34	chr11:34228600-34236600	Weak transcription	Right Atrium	heart
35	chr11:34228800-34230200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:34228800-34231600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:34228800-34237200	Enhancers	HepG2	liver
38	chr11:34229000-34230200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:34229000-34231600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:34229000-34235000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:34229200-34230600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:34229200-34235800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:34229200-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:34229400-34230200	Weak transcription	Placenta	Placenta
45	chr11:34229600-34230200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr11:34229600-34230400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:34229600-34230600	Enhancers	Hela-S3	cervix
48	chr11:34229600-34234200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:34229800-34230400	Enhancers	NHEK	skin
50	chr11:34229800-34230600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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