Variant report

Variant	rs559592604
Chromosome Location	chr8:87189327-87189328
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr8:87188926-87189439	MCF-7	breast:	n/a	chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
2	TCF12	chr8:87187945-87189484	SK-N-SH	brain:	n/a	n/a
3	FOS	chr8:87188908-87189343	MCF10A-Er-Src	breast:	n/a	chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189192-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
4	FOS	chr8:87188778-87189577	HUVEC	blood vessel:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189192-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
5	FOSL2	chr8:87188664-87189453	A549	lung:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
6	POLR2A	chr8:87189013-87189381	SK-N-SH	brain:	n/a	n/a
7	TEAD4	chr8:87188877-87189526	SK-N-SH	brain:	n/a	n/a
8	EP300	chr8:87189025-87189384	SK-N-SH_RA	brain:	n/a	chr8:87189048-87189061 chr8:87189194-87189203
9	FOS	chr8:87188835-87189335	MCF10A-Er-Src	breast:	n/a	chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189192-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
10	EP300	chr8:87189054-87189336	Hela-S3	cervix:	n/a	chr8:87189194-87189203
11	FOSL2	chr8:87188877-87189475	MCF-7	breast:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
12	SP1	chr8:87188690-87189556	HCT-116	colon:	n/a	n/a
13	JUND	chr8:87188865-87189477	SK-N-SH	brain:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
14	EP300	chr8:87188804-87189398	SK-N-SH	brain:	n/a	chr8:87189048-87189061 chr8:87189194-87189203
15	RAD21	chr8:87189046-87189344	SK-N-SH_RA	brain:	n/a	n/a
16	NFIC	chr8:87188863-87189447	ECC-1	luminal epithelium:	n/a	n/a
17	FOS	chr8:87188684-87189378	MCF10A-Er-Src	breast:	n/a	chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189192-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
18	FOSL2	chr8:87188913-87189377	SK-N-SH	brain:	n/a	chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
19	FOS	chr8:87188768-87189386	MCF10A-Er-Src	breast:	n/a	chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189192-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
20	NFIC	chr8:87188821-87189518	SK-N-SH	brain:	n/a	n/a
21	JUND	chr8:87188732-87189501	SK-N-SH	brain:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
22	JUND	chr8:87188826-87189503	SK-N-SH	brain:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
23	TCF12	chr8:87188596-87189475	A549	lung:	n/a	n/a
24	FOSL1	chr8:87188598-87189574	HCT-116	colon:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
25	TCF12	chr8:87188160-87189499	SK-N-SH	brain:	n/a	n/a
26	PBX3	chr8:87188839-87189531	SK-N-SH	brain:	n/a	n/a
27	JUND	chr8:87188630-87189489	HCT-116	colon:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
28	POLR2A	chr8:87188807-87189439	U87	brain:	n/a	n/a
29	FOSL2	chr8:87188740-87189499	SK-N-SH	brain:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
30	JUND	chr8:87188771-87189548	HCT-116	colon:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
31	GATA3	chr8:87187938-87189502	SK-N-SH	brain:	n/a	n/a
32	SIN3AK20	chr8:87188025-87189412	MCF-7	breast:	n/a	n/a
33	PBX3	chr8:87188915-87189443	SK-N-SH	brain:	n/a	n/a
34	GATA3	chr8:87188822-87189441	SK-N-SH	brain:	n/a	n/a
35	EP300	chr8:87188997-87189386	SK-N-SH_RA	brain:	n/a	chr8:87189048-87189061 chr8:87189194-87189203
36	FOSL2	chr8:87189033-87189353	A549	lung:	n/a	chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202
37	FOSL1	chr8:87188728-87189476	HCT-116	colon:	n/a	chr8:87189434-87189446 chr8:87189194-87189202 chr8:87189193-87189203 chr8:87189194-87189201 chr8:87189192-87189204 chr8:87189194-87189202

No.	Distal block	Cell Line	Cell type
1	chr8:87187097..87192513-chr8:87353340..87357451,6	MCF-7	breast:
2	chr8:87188610..87190453-chr8:87196607..87198359,2	MCF-7	breast:
3	chr8:87187644..87190858-chr8:87193352..87196070,3	MCF-7	breast:
4	chr8:87187218..87190589-chr8:87353304..87356196,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253699	TF binding region
ENSG00000254231	Chromatin interaction
ENSG00000123124	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:77 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv611674	chr8:87156172-87315920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027648	chr8:87161437-87319476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv1815028	chr8:87166396-87205568	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1020485	chr8:87167184-87330873	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1023114	chr8:87167184-87335197	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1033960	chr8:87167790-87334194	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1016050	chr8:87167790-87335197	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv6290	chr8:87175740-87229808	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1016177	chr8:87177368-87319476	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv1023772	chr8:87177368-87334194	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv1031874	chr8:87177368-87335197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv1030401	chr8:87177368-87337260	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv1033007	chr8:87185458-87319476	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	esv2761445	chr8:87185470-87335197	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
21	esv3355190	chr8:87186336-87190934	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	esv1807642	chr8:87187050-87193911	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	esv1810589	chr8:87187050-87201127	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	esv1811895	chr8:87187050-87201127	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv465733	chr8:87187050-87302328	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
26	nsv611675	chr8:87187050-87302328	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv519507	chr8:87187195-87333968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
28	esv3479566	chr8:87187823-87194053	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv968536	chr8:87188087-87192770	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
30	esv3479567	chr8:87188119-87193859	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
31	esv3479561	chr8:87188175-87193817	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
32	esv3479562	chr8:87188179-87193861	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
33	esv3479564	chr8:87188195-87193769	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
34	esv3479565	chr8:87188233-87193751	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv515109	chr8:87188244-87193644	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
36	esv3479568	chr8:87188249-87193749	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
37	esv18804	chr8:87188259-87195171	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
38	nsv611676	chr8:87188805-87191508	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
39	nsv611677	chr8:87188805-87192101	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
40	nsv611678	chr8:87188805-87192664	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
41	nsv611679	chr8:87188805-87192754	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
42	nsv611680	chr8:87188805-87193275	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
43	esv1809388	chr8:87188805-87193705	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
44	esv1811042	chr8:87188805-87193705	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
45	esv1815115	chr8:87188805-87193705	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
46	nsv611681	chr8:87188805-87193705	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
47	esv1811409	chr8:87188805-87193911	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
48	esv1814844	chr8:87188805-87193911	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
49	nsv611682	chr8:87188805-87193911	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
50	esv1812977	chr8:87188805-87201127	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87187000-87189800	Enhancers	Hela-S3	cervix
2	chr8:87187600-87189800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr8:87187800-87189400	Enhancers	Osteobl	bone
4	chr8:87187800-87190000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:87188000-87189400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:87188000-87189400	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr8:87188000-87189400	Flanking Active TSS	HUVEC	blood vessel
8	chr8:87188200-87189400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:87188200-87189400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:87188200-87189400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:87188200-87189400	Enhancers	Brain Cingulate Gyrus	brain
12	chr8:87188200-87189400	Flanking Active TSS	HMEC	breast
13	chr8:87188200-87189400	Enhancers	NHDF-Ad	bronchial
14	chr8:87188200-87190000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:87188400-87189400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:87188400-87189400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:87188400-87189400	Enhancers	Brain Anterior Caudate	brain
18	chr8:87188400-87189800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:87188600-87189400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:87188800-87189400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:87189000-87189400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:87189000-87189400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:87189000-87189400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:87189000-87189400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:87189000-87189800	Enhancers	HSMMtube	muscle
26	chr8:87189200-87189600	Weak transcription	Fetal Lung	lung
27	chr8:87189200-87189800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:87189200-87189800	Enhancers	HSMM	muscle
29	chr8:87189200-87189800	Enhancers	NH-A	brain
30	chr8:87189200-87190200	Enhancers	A549	lung
31	chr8:87189200-87190400	Enhancers	NHEK	skin

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