Variant report

Variant	rs55963851
Chromosome Location	chr7:83938216-83938217
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2040757	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2040758	0.89[AFR][1000 genomes]
rs55702202	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55753202	0.85[ASN][1000 genomes]
rs55810418	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55864831	0.85[ASN][1000 genomes]
rs55868228	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980937	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56013706	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56021068	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56178847	0.89[AFR][1000 genomes]
rs56270377	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294026	0.89[AFR][1000 genomes]
rs56345939	0.89[AFR][1000 genomes]
rs56349344	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56364289	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56801502	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs57237919	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58227364	0.89[AFR][1000 genomes]
rs59630020	0.85[ASN][1000 genomes]
rs59983170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821042	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73181383	0.89[AFR][1000 genomes]
rs73185105	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73189030	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73712711	0.89[AFR][1000 genomes]
rs9986714	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1793815	chr7:83909503-83997755	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv524905	chr7:83911271-83944506	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv888631	chr7:83911271-84010005	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83924400-83943800	Weak transcription	NHDF-Ad	bronchial
2	chr7:83930800-83950000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:83937000-83938800	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:83937000-83940800	Weak transcription	Rectal Smooth Muscle	rectum

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