Variant report

Variant	rs55868228
Chromosome Location	chr7:83923330-83923331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs2040757	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2040758	1.00[AFR][1000 genomes]
rs55702202	1.00[AFR][1000 genomes]
rs55753202	0.85[ASN][1000 genomes]
rs55810418	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs55864831	0.85[ASN][1000 genomes]
rs55963851	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980937	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56013706	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56021068	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56178847	1.00[AFR][1000 genomes]
rs56270377	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294026	1.00[AFR][1000 genomes]
rs56345939	1.00[AFR][1000 genomes]
rs56349344	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56364289	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56801502	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57237919	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58227364	1.00[AFR][1000 genomes]
rs59630020	0.85[ASN][1000 genomes]
rs59983170	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821042	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73181383	1.00[AFR][1000 genomes]
rs73185105	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73185126	0.84[EUR][1000 genomes]
rs73189030	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73712711	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9986714	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1793815	chr7:83909503-83997755	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv524905	chr7:83911271-83944506	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv888631	chr7:83911271-84010005	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2762683	chr7:83916748-83932659	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83894200-83924000	Weak transcription	NHDF-Ad	bronchial

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