Variant report

Variant	rs73185126
Chromosome Location	chr7:83909046-83909047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1607671	0.85[AFR][1000 genomes]
rs2040757	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040758	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372157	0.90[AFR][1000 genomes]
rs55702202	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55810418	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55868228	0.84[EUR][1000 genomes]
rs55980937	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56013706	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56021068	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56178847	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294026	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345939	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56349344	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364289	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56801502	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57237919	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58227364	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821042	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61274937	0.92[AFR][1000 genomes]
rs724050	0.92[EUR][1000 genomes]
rs73181383	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185105	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73712711	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792146	0.85[AFR][1000 genomes]
rs7808861	0.80[AFR][1000 genomes]
rs7808880	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv5818	chr7:83874968-83919804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83894200-83924000	Weak transcription	NHDF-Ad	bronchial
2	chr7:83901400-83910600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:83903800-83911400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:83908000-83909200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:83908200-83913600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:83908200-83913600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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